Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 AL133373.2-201ENST00000623187 2828 ntBASIC16.69■□□□□ 0.26
NKX3-1Q99801 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 AF201337.1-201ENST00000520239 748 ntBASIC16.69■□□□□ 0.26
NKX3-1Q99801 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 MARS-234ENST00000630571 216 ntTSL 5 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 MARS-235ENST00000630803 183 ntTSL 3 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 WIZP1-201ENST00000531444 2299 ntBASIC16.68■□□□□ 0.26
NKX3-1Q99801 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.68■□□□□ 0.26
NKX3-1Q99801 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NKX3-1Q99801 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.67■□□□□ 0.26
NKX3-1Q99801 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX3-1Q99801 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 SERPINH1P1-201ENST00000419794 1249 ntBASIC16.66■□□□□ 0.26
NKX3-1Q99801 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms