Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28AQ8IWP9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 AC099791.2-201ENST00000605725 427 ntBASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 PCDH8P1-201ENST00000428983 2773 ntBASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 NKILA-202ENST00000614771 2598 ntBASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28AQ8IWP9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 DUX4L19-201ENST00000557448 1267 ntBASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 pRNA.6-201ENST00000610482 90 ntBASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 pRNA.5-201ENST00000612139 90 ntBASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 pRNA.11-201ENST00000618423 90 ntBASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 pRNA.13-201ENST00000619112 90 ntBASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 PKD1P5-201ENST00000532415 10291 ntBASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 AC011676.5-201ENST00000624864 2660 ntBASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms