Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHFQ7M4L6 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHFQ7M4L6 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.31■□□□□ 0.36
SHFQ7M4L6 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.31■□□□□ 0.36
SHFQ7M4L6 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHFQ7M4L6 AC090340.1-201ENST00000620778 4980 ntBASIC17.3■□□□□ 0.36
SHFQ7M4L6 AC090164.3-201ENST00000610780 2143 ntBASIC17.3■□□□□ 0.36
SHFQ7M4L6 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 AC026185.1-201ENST00000445748 174 ntBASIC17.3■□□□□ 0.36
SHFQ7M4L6 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 AC135050.7-201ENST00000624508 2218 ntBASIC17.3■□□□□ 0.36
SHFQ7M4L6 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 AL031598.1-201ENST00000561511 1773 ntBASIC17.3■□□□□ 0.36
SHFQ7M4L6 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 SDHAP1-207ENST00000440850 2000 ntBASIC17.3■□□□□ 0.36
SHFQ7M4L6 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.3■□□□□ 0.36
SHFQ7M4L6 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHFQ7M4L6 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHFQ7M4L6 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHFQ7M4L6 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHFQ7M4L6 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHFQ7M4L6 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHFQ7M4L6 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHFQ7M4L6 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 FZD10-202ENST00000539839 3282 ntBASIC17.29■□□□□ 0.36
SHFQ7M4L6 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
SHFQ7M4L6 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 TFP1-202ENST00000475455 1573 ntBASIC17.28■□□□□ 0.36
SHFQ7M4L6 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 CDCA4P2-201ENST00000441182 718 ntBASIC17.28■□□□□ 0.36
SHFQ7M4L6 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 AC005829.2-201ENST00000571422 1056 ntBASIC17.28■□□□□ 0.36
SHFQ7M4L6 AL137784.2-201ENST00000607332 1000 ntBASIC17.28■□□□□ 0.36
SHFQ7M4L6 AC092437.1-201ENST00000624794 1048 ntBASIC17.28■□□□□ 0.36
SHFQ7M4L6 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHFQ7M4L6 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SHFQ7M4L6 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SHFQ7M4L6 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHFQ7M4L6 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHFQ7M4L6 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHFQ7M4L6 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.27■□□□□ 0.36
SHFQ7M4L6 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.27■□□□□ 0.36
SHFQ7M4L6 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHFQ7M4L6 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHFQ7M4L6 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.27■□□□□ 0.36
SHFQ7M4L6 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.27■□□□□ 0.36
SHFQ7M4L6 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms