Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.19■■□□□ 1.14
KRT40Q6A162 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
KRT40Q6A162 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT40Q6A162 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.19■■□□□ 1.14
KRT40Q6A162 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT40Q6A162 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
KRT40Q6A162 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
KRT40Q6A162 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
KRT40Q6A162 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC22.19■■□□□ 1.14
KRT40Q6A162 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC22.19■■□□□ 1.14
KRT40Q6A162 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.19■■□□□ 1.14
KRT40Q6A162 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.19■■□□□ 1.14
KRT40Q6A162 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.19■■□□□ 1.14
KRT40Q6A162 AC097493.4-201ENST00000641197 219 ntBASIC22.19■■□□□ 1.14
KRT40Q6A162 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT40Q6A162 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT40Q6A162 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
KRT40Q6A162 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC22.19■■□□□ 1.14
KRT40Q6A162 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
KRT40Q6A162 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
KRT40Q6A162 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
KRT40Q6A162 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
KRT40Q6A162 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC22.18■■□□□ 1.14
KRT40Q6A162 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
KRT40Q6A162 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.18■■□□□ 1.14
KRT40Q6A162 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC22.18■■□□□ 1.14
KRT40Q6A162 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC22.18■■□□□ 1.14
KRT40Q6A162 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.18■■□□□ 1.14
KRT40Q6A162 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC22.18■■□□□ 1.14
KRT40Q6A162 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.18■■□□□ 1.14
KRT40Q6A162 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT40Q6A162 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT40Q6A162 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT40Q6A162 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
KRT40Q6A162 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT40Q6A162 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC22.17■■□□□ 1.14
KRT40Q6A162 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
KRT40Q6A162 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
KRT40Q6A162 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT40Q6A162 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC22.17■■□□□ 1.14
KRT40Q6A162 AL355075.4-201ENST00000554988 638 ntBASIC22.17■■□□□ 1.14
KRT40Q6A162 RN7SL850P-201ENST00000579959 291 ntBASIC22.17■■□□□ 1.14
KRT40Q6A162 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.17■■□□□ 1.14
KRT40Q6A162 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC22.17■■□□□ 1.14
KRT40Q6A162 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
KRT40Q6A162 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC22.17■■□□□ 1.14
KRT40Q6A162 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT40Q6A162 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC22.17■■□□□ 1.14
KRT40Q6A162 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
KRT40Q6A162 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT40Q6A162 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT40Q6A162 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
KRT40Q6A162 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT40Q6A162 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.16■■□□□ 1.14
KRT40Q6A162 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.16■■□□□ 1.14
KRT40Q6A162 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT40Q6A162 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT40Q6A162 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT40Q6A162 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT40Q6A162 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 IRX1P1-201ENST00000438849 1838 ntBASIC22.15■■□□□ 1.14
KRT40Q6A162 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 ARMC10P1-201ENST00000313754 855 ntBASIC22.15■■□□□ 1.14
KRT40Q6A162 TMPOP1-202ENST00000424642 1267 ntBASIC22.15■■□□□ 1.14
KRT40Q6A162 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC22.15■■□□□ 1.14
KRT40Q6A162 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC22.15■■□□□ 1.14
KRT40Q6A162 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
KRT40Q6A162 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.15■■□□□ 1.14
KRT40Q6A162 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC22.15■■□□□ 1.14
KRT40Q6A162 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms