Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 CKBP1-201ENST00000565489 1086 ntBASIC18.39■□□□□ 0.53
COL28A1Q2UY09 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 SMG8-203ENST00000578922 2178 ntBASIC18.39■□□□□ 0.53
COL28A1Q2UY09 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 FAAHP1-202ENST00000446499 1238 ntBASIC18.38■□□□□ 0.53
COL28A1Q2UY09 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 PRSS44-201ENST00000515154 1146 ntBASIC18.38■□□□□ 0.53
COL28A1Q2UY09 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 AC092119.3-201ENST00000612618 583 ntBASIC18.38■□□□□ 0.53
COL28A1Q2UY09 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.38■□□□□ 0.53
COL28A1Q2UY09 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 SLC25A1P2-201ENST00000430693 912 ntBASIC18.37■□□□□ 0.53
COL28A1Q2UY09 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 AP000692.2-201ENST00000608391 879 ntBASIC18.37■□□□□ 0.53
COL28A1Q2UY09 AC131212.4-201ENST00000623606 975 ntBASIC18.37■□□□□ 0.53
COL28A1Q2UY09 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 AL512408.1-201ENST00000569378 2000 ntBASIC18.37■□□□□ 0.53
COL28A1Q2UY09 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL28A1Q2UY09 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 MFAP1P1-201ENST00000442257 1255 ntBASIC18.36■□□□□ 0.53
COL28A1Q2UY09 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 AC008622.2-201ENST00000617006 1229 ntBASIC18.36■□□□□ 0.53
COL28A1Q2UY09 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL28A1Q2UY09 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms