Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC11.13□□□□□ -0.63
RPS28P62857 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
RPS28P62857 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC11.13□□□□□ -0.63
RPS28P62857 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
RPS28P62857 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC11.13□□□□□ -0.63
RPS28P62857 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC11.13□□□□□ -0.63
RPS28P62857 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
RPS28P62857 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC11.13□□□□□ -0.63
RPS28P62857 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPS28P62857 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC11.13□□□□□ -0.63
RPS28P62857 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC11.12□□□□□ -0.63
RPS28P62857 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
RPS28P62857 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
RPS28P62857 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
RPS28P62857 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 SLC25A6P5-201ENST00000435663 894 ntBASIC11.12□□□□□ -0.63
RPS28P62857 NARF-204ENST00000390006 1766 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
RPS28P62857 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 AC026691.1-201ENST00000602502 2017 ntBASIC11.12□□□□□ -0.63
RPS28P62857 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
RPS28P62857 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC11.12□□□□□ -0.63
RPS28P62857 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 AC093010.1-201ENST00000473625 1624 ntBASIC11.12□□□□□ -0.63
RPS28P62857 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC11.12□□□□□ -0.63
RPS28P62857 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 AC007950.2-201ENST00000615045 2347 ntBASIC11.12□□□□□ -0.63
RPS28P62857 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC11.12□□□□□ -0.63
RPS28P62857 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPS28P62857 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
RPS28P62857 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC11.11□□□□□ -0.63
RPS28P62857 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC11.11□□□□□ -0.63
RPS28P62857 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC11.11□□□□□ -0.63
RPS28P62857 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC11.11□□□□□ -0.63
RPS28P62857 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC11.11□□□□□ -0.63
RPS28P62857 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC11.11□□□□□ -0.63
RPS28P62857 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPS28P62857 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
RPS28P62857 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms