Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 GPAT2P1-201ENST00000444924 1672 ntBASIC22.13■■□□□ 1.13
HMGCS2P54868 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.13■■□□□ 1.13
HMGCS2P54868 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
HMGCS2P54868 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC22.13■■□□□ 1.13
HMGCS2P54868 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.12■■□□□ 1.13
HMGCS2P54868 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
HMGCS2P54868 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC22.12■■□□□ 1.13
HMGCS2P54868 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC22.12■■□□□ 1.13
HMGCS2P54868 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC22.12■■□□□ 1.13
HMGCS2P54868 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC22.12■■□□□ 1.13
HMGCS2P54868 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC22.12■■□□□ 1.13
HMGCS2P54868 CNP-204ENST00000472031 1019 ntTSL 2 BASIC22.12■■□□□ 1.13
HMGCS2P54868 AC092597.1-201ENST00000487352 616 ntBASIC22.12■■□□□ 1.13
HMGCS2P54868 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGCS2P54868 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
HMGCS2P54868 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGCS2P54868 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 ATP5G2P1-201ENST00000433580 426 ntBASIC22.11■■□□□ 1.13
HMGCS2P54868 RASA4DP-201ENST00000460726 1199 ntBASIC22.11■■□□□ 1.13
HMGCS2P54868 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC22.11■■□□□ 1.13
HMGCS2P54868 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGCS2P54868 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC22.11■■□□□ 1.13
HMGCS2P54868 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
HMGCS2P54868 BCL10-202ENST00000620248 774 ntTSL 5 BASIC22.11■■□□□ 1.13
HMGCS2P54868 TCF3P1-201ENST00000423021 1937 ntBASIC22.11■■□□□ 1.13
HMGCS2P54868 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
HMGCS2P54868 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGCS2P54868 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC22.11■■□□□ 1.13
HMGCS2P54868 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGCS2P54868 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGCS2P54868 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.1■■□□□ 1.13
HMGCS2P54868 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.1■■□□□ 1.13
HMGCS2P54868 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC22.1■■□□□ 1.13
HMGCS2P54868 TSPY21P-201ENST00000433481 731 ntBASIC22.1■■□□□ 1.13
HMGCS2P54868 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.1■■□□□ 1.13
HMGCS2P54868 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGCS2P54868 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGCS2P54868 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGCS2P54868 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC22.1■■□□□ 1.13
HMGCS2P54868 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGCS2P54868 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC22.1■■□□□ 1.13
HMGCS2P54868 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGCS2P54868 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
HMGCS2P54868 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 AC036111.1-201ENST00000533973 1582 ntBASIC22.09■■□□□ 1.13
HMGCS2P54868 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC22.09■■□□□ 1.13
HMGCS2P54868 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC22.09■■□□□ 1.13
HMGCS2P54868 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC22.09■■□□□ 1.13
HMGCS2P54868 AC026396.1-201ENST00000419388 421 ntBASIC22.09■■□□□ 1.13
HMGCS2P54868 AL645929.1-201ENST00000420084 975 ntBASIC22.09■■□□□ 1.13
HMGCS2P54868 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC22.09■■□□□ 1.13
HMGCS2P54868 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGCS2P54868 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.09■■□□□ 1.13
HMGCS2P54868 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC22.08■■□□□ 1.13
HMGCS2P54868 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms