Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
COL5A3P25940 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
COL5A3P25940 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
COL5A3P25940 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC24.2■■□□□ 1.46
COL5A3P25940 KRT18P1-202ENST00000452408 1331 ntBASIC24.2■■□□□ 1.46
COL5A3P25940 SDHAP1-207ENST00000440850 2000 ntBASIC24.2■■□□□ 1.46
COL5A3P25940 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC24.19■■□□□ 1.46
COL5A3P25940 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 DRAXINP1-201ENST00000437611 948 ntBASIC24.19■■□□□ 1.46
COL5A3P25940 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC24.19■■□□□ 1.46
COL5A3P25940 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC24.19■■□□□ 1.46
COL5A3P25940 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC24.19■■□□□ 1.46
COL5A3P25940 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC24.19■■□□□ 1.46
COL5A3P25940 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
COL5A3P25940 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL5A3P25940 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
COL5A3P25940 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC24.18■■□□□ 1.46
COL5A3P25940 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC24.18■■□□□ 1.46
COL5A3P25940 BMF-207ENST00000559701 630 ntTSL 3 BASIC24.18■■□□□ 1.46
COL5A3P25940 MPI-205ENST00000562606 1052 ntTSL 3 BASIC24.18■■□□□ 1.46
COL5A3P25940 MIR3917-201ENST00000580971 93 ntBASIC24.18■■□□□ 1.46
COL5A3P25940 TEN1-204ENST00000588202 862 ntTSL 3 BASIC24.18■■□□□ 1.46
COL5A3P25940 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC24.18■■□□□ 1.46
COL5A3P25940 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
COL5A3P25940 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
COL5A3P25940 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
COL5A3P25940 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
COL5A3P25940 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC24.18■■□□□ 1.46
COL5A3P25940 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
COL5A3P25940 AL023284.2-201ENST00000405850 579 ntBASIC24.18■■□□□ 1.46
COL5A3P25940 FAAHP1-202ENST00000446499 1238 ntBASIC24.18■■□□□ 1.46
COL5A3P25940 RNF126P1-202ENST00000569893 925 ntBASIC24.18■■□□□ 1.46
COL5A3P25940 SLC25A6P4-201ENST00000586535 553 ntBASIC24.18■■□□□ 1.46
COL5A3P25940 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC24.18■■□□□ 1.46
COL5A3P25940 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC24.18■■□□□ 1.46
COL5A3P25940 AL391807.1-203ENST00000604392 2365 ntBASIC24.18■■□□□ 1.46
COL5A3P25940 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
COL5A3P25940 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC24.18■■□□□ 1.46
COL5A3P25940 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 TCF3P1-201ENST00000423021 1937 ntBASIC24.17■■□□□ 1.46
COL5A3P25940 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
COL5A3P25940 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC24.17■■□□□ 1.46
COL5A3P25940 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
COL5A3P25940 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC24.17■■□□□ 1.46
COL5A3P25940 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL5A3P25940 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
COL5A3P25940 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
COL5A3P25940 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC24.16■■□□□ 1.46
COL5A3P25940 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
COL5A3P25940 MCCD1P1-208ENST00000445732 328 ntBASIC24.16■■□□□ 1.46
COL5A3P25940 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC24.16■■□□□ 1.46
COL5A3P25940 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
COL5A3P25940 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC24.16■■□□□ 1.46
COL5A3P25940 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC24.16■■□□□ 1.46
COL5A3P25940 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
COL5A3P25940 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC24.16■■□□□ 1.46
COL5A3P25940 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
COL5A3P25940 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC24.16■■□□□ 1.46
COL5A3P25940 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
COL5A3P25940 AC009078.2-202ENST00000463353 338 ntBASIC24.15■■□□□ 1.46
COL5A3P25940 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC24.15■■□□□ 1.46
COL5A3P25940 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL5A3P25940 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC24.15■■□□□ 1.46
COL5A3P25940 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC24.15■■□□□ 1.46
COL5A3P25940 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC24.15■■□□□ 1.46
COL5A3P25940 AC011498.5-201ENST00000592027 486 ntBASIC24.15■■□□□ 1.46
COL5A3P25940 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
COL5A3P25940 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL5A3P25940 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL5A3P25940 AC099778.1-201ENST00000568593 1911 ntBASIC24.15■■□□□ 1.46
COL5A3P25940 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL5A3P25940 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC24.15■■□□□ 1.46
COL5A3P25940 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC24.15■■□□□ 1.46
COL5A3P25940 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
COL5A3P25940 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL5A3P25940 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC24.14■■□□□ 1.46
COL5A3P25940 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
COL5A3P25940 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
COL5A3P25940 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
COL5A3P25940 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
COL5A3P25940 TSPY19P-201ENST00000418461 509 ntBASIC24.14■■□□□ 1.45
COL5A3P25940 TSPY18P-201ENST00000441642 509 ntBASIC24.14■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms