Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A2P12110 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 AC090164.3-201ENST00000610780 2143 ntBASIC18.92■□□□□ 0.62
COL6A2P12110 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A2P12110 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A2P12110 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
COL6A2P12110 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A2P12110 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 WIZP1-201ENST00000531444 2299 ntBASIC18.92■□□□□ 0.62
COL6A2P12110 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
COL6A2P12110 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A2P12110 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.92■□□□□ 0.62
COL6A2P12110 SOX15-203ENST00000570788 1093 ntBASIC18.92■□□□□ 0.62
COL6A2P12110 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A2P12110 AC083880.1-201ENST00000608266 535 ntBASIC18.92■□□□□ 0.62
COL6A2P12110 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A2P12110 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A2P12110 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A2P12110 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A2P12110 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
COL6A2P12110 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A2P12110 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL6A2P12110 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A2P12110 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A2P12110 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A2P12110 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.91■□□□□ 0.62
COL6A2P12110 TSPY21P-201ENST00000433481 731 ntBASIC18.91■□□□□ 0.62
COL6A2P12110 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.91■□□□□ 0.62
COL6A2P12110 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 AL138781.1-201ENST00000566567 1274 ntBASIC18.91■□□□□ 0.62
COL6A2P12110 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.91■□□□□ 0.62
COL6A2P12110 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.91■□□□□ 0.62
COL6A2P12110 AC083906.6-201ENST00000641366 219 ntBASIC18.91■□□□□ 0.62
COL6A2P12110 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A2P12110 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.9■□□□□ 0.62
COL6A2P12110 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 AC009113.1-201ENST00000570267 2443 ntBASIC18.9■□□□□ 0.62
COL6A2P12110 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A2P12110 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.9■□□□□ 0.62
COL6A2P12110 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL6A2P12110 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL6A2P12110 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL6A2P12110 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A2P12110 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL6A2P12110 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL6A2P12110 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL6A2P12110 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL6A2P12110 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.89■□□□□ 0.62
COL6A2P12110 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
COL6A2P12110 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.89■□□□□ 0.61
COL6A2P12110 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL6A2P12110 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
COL6A2P12110 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A2P12110 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A2P12110 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
COL6A2P12110 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A2P12110 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms