Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.22■□□□□ 0.99
MMP3P08254 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.22■□□□□ 0.99
MMP3P08254 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.22■□□□□ 0.99
MMP3P08254 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MMP3P08254 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.22■□□□□ 0.99
MMP3P08254 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.22■□□□□ 0.99
MMP3P08254 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
MMP3P08254 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MMP3P08254 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MMP3P08254 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.22■□□□□ 0.99
MMP3P08254 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.21■□□□□ 0.99
MMP3P08254 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
MMP3P08254 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.21■□□□□ 0.99
MMP3P08254 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
MMP3P08254 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
MMP3P08254 AC069148.1-201ENST00000608741 768 ntBASIC21.21■□□□□ 0.99
MMP3P08254 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.21■□□□□ 0.99
MMP3P08254 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MMP3P08254 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
MMP3P08254 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
MMP3P08254 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
MMP3P08254 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP3P08254 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.2■□□□□ 0.98
MMP3P08254 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
MMP3P08254 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MMP3P08254 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MMP3P08254 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.2■□□□□ 0.98
MMP3P08254 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
MMP3P08254 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP3P08254 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.2■□□□□ 0.98
MMP3P08254 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.2■□□□□ 0.98
MMP3P08254 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MMP3P08254 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.2■□□□□ 0.98
MMP3P08254 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP3P08254 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.2■□□□□ 0.98
MMP3P08254 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.2■□□□□ 0.98
MMP3P08254 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP3P08254 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
MMP3P08254 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP3P08254 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
MMP3P08254 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
MMP3P08254 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.19■□□□□ 0.98
MMP3P08254 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.19■□□□□ 0.98
MMP3P08254 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.19■□□□□ 0.98
MMP3P08254 SPDYE13P-201ENST00000445314 798 ntBASIC21.19■□□□□ 0.98
MMP3P08254 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
MMP3P08254 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.19■□□□□ 0.98
MMP3P08254 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.19■□□□□ 0.98
MMP3P08254 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
MMP3P08254 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
MMP3P08254 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.19■□□□□ 0.98
MMP3P08254 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
MMP3P08254 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
MMP3P08254 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.18■□□□□ 0.98
MMP3P08254 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.18■□□□□ 0.98
MMP3P08254 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.18■□□□□ 0.98
MMP3P08254 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
MMP3P08254 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 AL023284.2-201ENST00000405850 579 ntBASIC21.18■□□□□ 0.98
MMP3P08254 KRT18P48-201ENST00000434763 852 ntBASIC21.18■□□□□ 0.98
MMP3P08254 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.18■□□□□ 0.98
MMP3P08254 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
MMP3P08254 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.18■□□□□ 0.98
MMP3P08254 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.18■□□□□ 0.98
MMP3P08254 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
MMP3P08254 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MMP3P08254 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
MMP3P08254 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MMP3P08254 AC036111.1-201ENST00000533973 1582 ntBASIC21.18■□□□□ 0.98
MMP3P08254 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms