Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.04■□□□□ 0.48
CLPTM1O96005 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CLPTM1O96005 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.04■□□□□ 0.48
CLPTM1O96005 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.04■□□□□ 0.48
CLPTM1O96005 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CLPTM1O96005 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
CLPTM1O96005 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.04■□□□□ 0.48
CLPTM1O96005 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.04■□□□□ 0.48
CLPTM1O96005 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.04■□□□□ 0.48
CLPTM1O96005 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.04■□□□□ 0.48
CLPTM1O96005 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.04■□□□□ 0.48
CLPTM1O96005 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLPTM1O96005 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.04■□□□□ 0.48
CLPTM1O96005 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CLPTM1O96005 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CLPTM1O96005 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CLPTM1O96005 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.03■□□□□ 0.48
CLPTM1O96005 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.03■□□□□ 0.48
CLPTM1O96005 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
CLPTM1O96005 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CLPTM1O96005 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 KRT18P11-201ENST00000435214 1283 ntBASIC18.03■□□□□ 0.48
CLPTM1O96005 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 KRT18P20-201ENST00000548986 1279 ntBASIC18.03■□□□□ 0.48
CLPTM1O96005 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.03■□□□□ 0.48
CLPTM1O96005 AC011767.1-201ENST00000617410 1153 ntBASIC18.03■□□□□ 0.48
CLPTM1O96005 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.03■□□□□ 0.48
CLPTM1O96005 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 AC093525.10-201ENST00000625130 1569 ntBASIC18.03■□□□□ 0.48
CLPTM1O96005 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.03■□□□□ 0.48
CLPTM1O96005 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLPTM1O96005 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 ABALON-201ENST00000629058 1903 ntBASIC18.02■□□□□ 0.48
CLPTM1O96005 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.02■□□□□ 0.48
CLPTM1O96005 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLPTM1O96005 BID-214ENST00000617586 542 ntTSL 5 BASIC18.02■□□□□ 0.48
CLPTM1O96005 MYCNOS-205ENST00000641950 531 ntBASIC18.02■□□□□ 0.48
CLPTM1O96005 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLPTM1O96005 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.02■□□□□ 0.47
CLPTM1O96005 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLPTM1O96005 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLPTM1O96005 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLPTM1O96005 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLPTM1O96005 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 AC124067.4-201ENST00000519691 2379 ntBASIC18.01■□□□□ 0.47
CLPTM1O96005 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.01■□□□□ 0.47
CLPTM1O96005 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.01■□□□□ 0.47
CLPTM1O96005 POU5F1P4-201ENST00000413175 1085 ntBASIC18.01■□□□□ 0.47
CLPTM1O96005 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.01■□□□□ 0.47
CLPTM1O96005 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.01■□□□□ 0.47
CLPTM1O96005 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.01■□□□□ 0.47
CLPTM1O96005 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CLPTM1O96005 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.01■□□□□ 0.47
CLPTM1O96005 MFSD11-216ENST00000590393 1141 ntBASIC18.01■□□□□ 0.47
CLPTM1O96005 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.01■□□□□ 0.47
CLPTM1O96005 AC080038.1-201ENST00000611274 1154 ntBASIC18.01■□□□□ 0.47
CLPTM1O96005 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLPTM1O96005 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.01■□□□□ 0.47
CLPTM1O96005 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms