Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.34■□□□□ 0.53
SEMA3DO95025 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
SEMA3DO95025 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SEMA3DO95025 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
SEMA3DO95025 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SEMA3DO95025 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.34■□□□□ 0.53
SEMA3DO95025 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SEMA3DO95025 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SEMA3DO95025 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SEMA3DO95025 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
SEMA3DO95025 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SEMA3DO95025 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.33■□□□□ 0.53
SEMA3DO95025 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SEMA3DO95025 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.33■□□□□ 0.53
SEMA3DO95025 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SEMA3DO95025 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SEMA3DO95025 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SEMA3DO95025 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SEMA3DO95025 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.33■□□□□ 0.52
SEMA3DO95025 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.33■□□□□ 0.52
SEMA3DO95025 AL353708.3-201ENST00000610272 989 ntBASIC18.33■□□□□ 0.52
SEMA3DO95025 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.33■□□□□ 0.52
SEMA3DO95025 AL445675.2-201ENST00000620291 557 ntBASIC18.33■□□□□ 0.52
SEMA3DO95025 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.33■□□□□ 0.52
SEMA3DO95025 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
SEMA3DO95025 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SEMA3DO95025 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SEMA3DO95025 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.33■□□□□ 0.52
SEMA3DO95025 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SEMA3DO95025 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.33■□□□□ 0.52
SEMA3DO95025 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SEMA3DO95025 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SEMA3DO95025 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.33■□□□□ 0.52
SEMA3DO95025 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SEMA3DO95025 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SEMA3DO95025 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SEMA3DO95025 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SEMA3DO95025 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SEMA3DO95025 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.32■□□□□ 0.52
SEMA3DO95025 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SEMA3DO95025 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.32■□□□□ 0.52
SEMA3DO95025 TSPY21P-201ENST00000433481 731 ntBASIC18.32■□□□□ 0.52
SEMA3DO95025 C1QBPP2-201ENST00000528754 825 ntBASIC18.32■□□□□ 0.52
SEMA3DO95025 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.32■□□□□ 0.52
SEMA3DO95025 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.32■□□□□ 0.52
SEMA3DO95025 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.32■□□□□ 0.52
SEMA3DO95025 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.32■□□□□ 0.52
SEMA3DO95025 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.32■□□□□ 0.52
SEMA3DO95025 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SEMA3DO95025 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SEMA3DO95025 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.32■□□□□ 0.52
SEMA3DO95025 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
SEMA3DO95025 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SEMA3DO95025 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SEMA3DO95025 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SEMA3DO95025 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SEMA3DO95025 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SEMA3DO95025 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.32■□□□□ 0.52
SEMA3DO95025 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
SEMA3DO95025 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SEMA3DO95025 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 NIFKP9-201ENST00000419265 221 ntBASIC18.31■□□□□ 0.52
SEMA3DO95025 AL353807.1-201ENST00000427475 662 ntBASIC18.31■□□□□ 0.52
SEMA3DO95025 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.31■□□□□ 0.52
SEMA3DO95025 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.31■□□□□ 0.52
SEMA3DO95025 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.31■□□□□ 0.52
SEMA3DO95025 AL161938.1-201ENST00000569833 2180 ntBASIC18.31■□□□□ 0.52
SEMA3DO95025 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SEMA3DO95025 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SEMA3DO95025 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SEMA3DO95025 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms