Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VPS4BO75351 AC133561.5-201ENST00000635547 218 ntBASIC18.77■□□□□ 0.6
VPS4BO75351 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VPS4BO75351 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VPS4BO75351 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS4BO75351 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
VPS4BO75351 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS4BO75351 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS4BO75351 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS4BO75351 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.77■□□□□ 0.59
VPS4BO75351 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.77■□□□□ 0.59
VPS4BO75351 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS4BO75351 TEX21P-204ENST00000641479 1693 ntBASIC18.76■□□□□ 0.59
VPS4BO75351 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 AC012618.2-201ENST00000428058 849 ntBASIC18.76■□□□□ 0.59
VPS4BO75351 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS4BO75351 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VPS4BO75351 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS4BO75351 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.76■□□□□ 0.59
VPS4BO75351 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS4BO75351 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS4BO75351 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VPS4BO75351 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS4BO75351 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
VPS4BO75351 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4BO75351 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
VPS4BO75351 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS4BO75351 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.75■□□□□ 0.59
VPS4BO75351 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4BO75351 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VPS4BO75351 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4BO75351 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4BO75351 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4BO75351 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4BO75351 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4BO75351 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS4BO75351 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4BO75351 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4BO75351 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
VPS4BO75351 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS4BO75351 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS4BO75351 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS4BO75351 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VPS4BO75351 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VPS4BO75351 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.74■□□□□ 0.59
VPS4BO75351 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.74■□□□□ 0.59
VPS4BO75351 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS4BO75351 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS4BO75351 AC233263.1-201ENST00000578059 224 ntBASIC18.74■□□□□ 0.59
VPS4BO75351 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
VPS4BO75351 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS4BO75351 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS4BO75351 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VPS4BO75351 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS4BO75351 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.73■□□□□ 0.59
VPS4BO75351 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS4BO75351 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS4BO75351 RPS2P55-201ENST00000397318 883 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms