Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.83■□□□□ 0.28
LMX1BO60663 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1BO60663 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
LMX1BO60663 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.83■□□□□ 0.28
LMX1BO60663 AC239809.2-201ENST00000415381 517 ntBASIC16.83■□□□□ 0.28
LMX1BO60663 TSPY7P-201ENST00000431358 1114 ntBASIC16.83■□□□□ 0.28
LMX1BO60663 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1BO60663 KRT18P21-201ENST00000515767 1272 ntBASIC16.83■□□□□ 0.28
LMX1BO60663 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1BO60663 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1BO60663 AC141586.3-201ENST00000562166 1838 ntBASIC16.83■□□□□ 0.28
LMX1BO60663 AL135905.2-201ENST00000584934 1404 ntBASIC16.83■□□□□ 0.28
LMX1BO60663 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC16.83■□□□□ 0.28
LMX1BO60663 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 AL023875.1-201ENST00000640777 796 ntBASIC16.83■□□□□ 0.28
LMX1BO60663 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
LMX1BO60663 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.82■□□□□ 0.28
LMX1BO60663 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LMX1BO60663 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
LMX1BO60663 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LMX1BO60663 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LMX1BO60663 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LMX1BO60663 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LMX1BO60663 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.82■□□□□ 0.28
LMX1BO60663 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
LMX1BO60663 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.82■□□□□ 0.28
LMX1BO60663 AC124016.1-201ENST00000609552 612 ntBASIC16.82■□□□□ 0.28
LMX1BO60663 AL049637.2-201ENST00000641778 930 ntBASIC16.82■□□□□ 0.28
LMX1BO60663 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 AC006333.2-201ENST00000607957 2099 ntBASIC16.82■□□□□ 0.28
LMX1BO60663 SDHAP1-207ENST00000440850 2000 ntBASIC16.82■□□□□ 0.28
LMX1BO60663 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LMX1BO60663 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1BO60663 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LMX1BO60663 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LMX1BO60663 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
LMX1BO60663 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
LMX1BO60663 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
LMX1BO60663 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LMX1BO60663 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1BO60663 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1BO60663 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.81■□□□□ 0.28
LMX1BO60663 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1BO60663 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LMX1BO60663 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LMX1BO60663 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1BO60663 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1BO60663 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.81■□□□□ 0.28
LMX1BO60663 AC133681.1-201ENST00000465482 601 ntBASIC16.81■□□□□ 0.28
LMX1BO60663 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LMX1BO60663 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.81■□□□□ 0.28
LMX1BO60663 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.81■□□□□ 0.28
LMX1BO60663 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.81■□□□□ 0.28
LMX1BO60663 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.81■□□□□ 0.28
LMX1BO60663 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.81■□□□□ 0.28
LMX1BO60663 AC110285.5-201ENST00000611501 352 ntBASIC16.81■□□□□ 0.28
LMX1BO60663 AC120498.8-201ENST00000614275 531 ntBASIC16.81■□□□□ 0.28
LMX1BO60663 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1BO60663 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LMX1BO60663 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1BO60663 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.8■□□□□ 0.28
LMX1BO60663 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms