Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 TESC-206ENST00000541210 936 ntTSL 3 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SMKR1H3BMG3 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 HLA-G-202ENST00000376815 851 ntBASIC14.01□□□□□ -0.17
SMKR1H3BMG3 HLA-G-203ENST00000376818 1127 ntBASIC14.01□□□□□ -0.17
SMKR1H3BMG3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 SLC7A5P1-201ENST00000568957 537 ntBASIC14.01□□□□□ -0.17
SMKR1H3BMG3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 AL136967.2-201ENST00000623968 743 ntBASIC14.01□□□□□ -0.17
SMKR1H3BMG3 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SMKR1H3BMG3 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
SMKR1H3BMG3 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC14□□□□□ -0.17
SMKR1H3BMG3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SMKR1H3BMG3 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14□□□□□ -0.17
SMKR1H3BMG3 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SMKR1H3BMG3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14□□□□□ -0.17
SMKR1H3BMG3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms