Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 HLA-L-209ENST00000420110 1011 ntBASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TCRBV7S3A2A0A539 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 AC233263.1-201ENST00000578059 224 ntBASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 HLA-A-209ENST00000638375 975 ntBASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.48■□□□□ 0.71
TCRBV7S3A2A0A539 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 Z98044.1-201ENST00000632503 1764 ntBASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TCRBV7S3A2A0A539 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 AC005082.1-201ENST00000413042 2259 ntBASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 NBPF21P-201ENST00000425093 1451 ntBASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.46■□□□□ 0.71
TCRBV7S3A2A0A539 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TCRBV7S3A2A0A539 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms