Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
TRAV17A0A0B4J275 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV17A0A0B4J275 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV17A0A0B4J275 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV17A0A0B4J275 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV17A0A0B4J275 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV17A0A0B4J275 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.33■□□□□ 0.36
TRAV17A0A0B4J275 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV17A0A0B4J275 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 AC005332.1-201ENST00000577698 1310 ntBASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 KRT18P56-201ENST00000507275 550 ntBASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 MIR4674-201ENST00000582457 87 ntBASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 CR769767.2-201ENST00000622735 460 ntBASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 AC116407.4-201ENST00000623319 1061 ntBASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV17A0A0B4J275 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 ZNF444P1-201ENST00000559497 298 ntBASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRAV17A0A0B4J275 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 AC034232.1-201ENST00000506026 1064 ntBASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 AC093458.2-201ENST00000623150 629 ntBASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV17A0A0B4J275 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV17A0A0B4J275 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV17A0A0B4J275 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRAV17A0A0B4J275 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms