Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 AC099791.1-201ENST00000416440 715 ntBASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 CASP6-205ENST00000505486 538 ntTSL 4 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 AC008764.7-201ENST00000593779 1081 ntBASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 HCG11-201ENST00000411553 5696 ntBASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.96□□□□□ -0.01
TRAV1-1A0A0B4J248 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC14.96□□□□□ -0.02
TRAV1-1A0A0B4J248 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
TRAV1-1A0A0B4J248 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.96□□□□□ -0.02
TRAV1-1A0A0B4J248 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRAV1-1A0A0B4J248 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 AC018553.1-201ENST00000616682 1458 ntBASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 IRS3P-201ENST00000223076 1006 ntBASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
TRAV1-1A0A0B4J248 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms