Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 AC018470.1-201ENST00000624790 3129 ntBASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 AL512625.2-201ENST00000417533 625 ntBASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 PARP1-210ENST00000629232 477 ntTSL 5 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 AL354751.1-201ENST00000412768 1863 ntBASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
UBE2D4Q9Y2X8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 AC007322.1-201ENST00000426983 750 ntBASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
UBE2D4Q9Y2X8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 LSM12P1-201ENST00000411836 588 ntBASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 AL390719.1-204ENST00000412397 1219 ntBASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 GXYLT1P2-201ENST00000433312 1230 ntBASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 AC093787.1-201ENST00000450396 207 ntBASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 ISCU-212ENST00000547005 795 ntTSL 3 BASIC13.34□□□□□ -0.27
UBE2D4Q9Y2X8 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms