Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 AC079598.2-202ENST00000546624 1451 ntBASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMA1Q9UHB6 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
LIMA1Q9UHB6 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
LIMA1Q9UHB6 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 AC007613.1-201ENST00000572811 2597 ntBASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMA1Q9UHB6 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 ANO7L1-203ENST00000602586 1720 ntBASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms