Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 AL359075.1-203ENST00000462729 1002 ntBASIC19.77■□□□□ 0.76
TDP1Q9NUW8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.77■□□□□ 0.76
TDP1Q9NUW8 AC008622.2-201ENST00000617006 1229 ntBASIC19.77■□□□□ 0.76
TDP1Q9NUW8 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
TDP1Q9NUW8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 TSPY23P-201ENST00000440136 739 ntBASIC19.76■□□□□ 0.75
TDP1Q9NUW8 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 NEK4P2-201ENST00000580004 1012 ntBASIC19.76■□□□□ 0.75
TDP1Q9NUW8 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 SDHAP1-207ENST00000440850 2000 ntBASIC19.76■□□□□ 0.75
TDP1Q9NUW8 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.76■□□□□ 0.75
TDP1Q9NUW8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.76■□□□□ 0.75
TDP1Q9NUW8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 AC009947.2-201ENST00000444014 672 ntBASIC19.75■□□□□ 0.75
TDP1Q9NUW8 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 AL121956.5-201ENST00000625261 221 ntBASIC19.75■□□□□ 0.75
TDP1Q9NUW8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TDP1Q9NUW8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 AL671277.2-201ENST00000458060 996 ntBASIC19.74■□□□□ 0.75
TDP1Q9NUW8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 AP000550.4-202ENST00000639755 178 ntBASIC19.74■□□□□ 0.75
TDP1Q9NUW8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.74■□□□□ 0.75
TDP1Q9NUW8 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms