Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
MMP28Q9H239 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.9■□□□□ 0.3
MMP28Q9H239 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
MMP28Q9H239 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC16.89■□□□□ 0.3
MMP28Q9H239 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.89■□□□□ 0.3
MMP28Q9H239 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MMP28Q9H239 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 RBM17P2-201ENST00000616397 1405 ntBASIC16.89■□□□□ 0.29
MMP28Q9H239 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC16.89■□□□□ 0.29
MMP28Q9H239 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
MMP28Q9H239 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.89■□□□□ 0.29
MMP28Q9H239 HLA-L-209ENST00000420110 1011 ntBASIC16.89■□□□□ 0.29
MMP28Q9H239 AC006015.1-201ENST00000429970 570 ntBASIC16.89■□□□□ 0.29
MMP28Q9H239 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.89■□□□□ 0.29
MMP28Q9H239 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC16.89■□□□□ 0.29
MMP28Q9H239 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.89■□□□□ 0.29
MMP28Q9H239 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.89■□□□□ 0.29
MMP28Q9H239 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MMP28Q9H239 AC009237.14-201ENST00000609975 1594 ntBASIC16.89■□□□□ 0.29
MMP28Q9H239 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.89■□□□□ 0.29
MMP28Q9H239 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
MMP28Q9H239 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MMP28Q9H239 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MMP28Q9H239 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.88■□□□□ 0.29
MMP28Q9H239 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
MMP28Q9H239 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.88■□□□□ 0.29
MMP28Q9H239 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.88■□□□□ 0.29
MMP28Q9H239 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC16.88■□□□□ 0.29
MMP28Q9H239 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.88■□□□□ 0.29
MMP28Q9H239 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC16.88■□□□□ 0.29
MMP28Q9H239 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
MMP28Q9H239 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
MMP28Q9H239 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.88■□□□□ 0.29
MMP28Q9H239 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.88■□□□□ 0.29
MMP28Q9H239 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
MMP28Q9H239 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MMP28Q9H239 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
MMP28Q9H239 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.87■□□□□ 0.29
MMP28Q9H239 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.87■□□□□ 0.29
MMP28Q9H239 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
MMP28Q9H239 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC16.87■□□□□ 0.29
MMP28Q9H239 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.87■□□□□ 0.29
MMP28Q9H239 AC010536.3-201ENST00000620306 533 ntBASIC16.87■□□□□ 0.29
MMP28Q9H239 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.87■□□□□ 0.29
MMP28Q9H239 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms