Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 REXO1L10P-201ENST00000615707 1290 ntBASIC17.61■□□□□ 0.41
TIMP4Q99727 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.61■□□□□ 0.41
TIMP4Q99727 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TIMP4Q99727 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.6■□□□□ 0.41
TIMP4Q99727 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TIMP4Q99727 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 AC087499.1-201ENST00000418141 1075 ntBASIC17.6■□□□□ 0.41
TIMP4Q99727 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.6■□□□□ 0.41
TIMP4Q99727 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.6■□□□□ 0.41
TIMP4Q99727 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.6■□□□□ 0.41
TIMP4Q99727 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.6■□□□□ 0.41
TIMP4Q99727 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.6■□□□□ 0.41
TIMP4Q99727 AL445675.2-201ENST00000620291 557 ntBASIC17.6■□□□□ 0.41
TIMP4Q99727 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.6■□□□□ 0.41
TIMP4Q99727 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.6■□□□□ 0.41
TIMP4Q99727 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.6■□□□□ 0.41
TIMP4Q99727 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TIMP4Q99727 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.6■□□□□ 0.41
TIMP4Q99727 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TIMP4Q99727 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TIMP4Q99727 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.6■□□□□ 0.41
TIMP4Q99727 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
TIMP4Q99727 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
TIMP4Q99727 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.59■□□□□ 0.41
TIMP4Q99727 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.59■□□□□ 0.41
TIMP4Q99727 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
TIMP4Q99727 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.59■□□□□ 0.41
TIMP4Q99727 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 AC116562.2-201ENST00000507042 360 ntBASIC17.59■□□□□ 0.41
TIMP4Q99727 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.59■□□□□ 0.41
TIMP4Q99727 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.59■□□□□ 0.41
TIMP4Q99727 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.59■□□□□ 0.41
TIMP4Q99727 LINC01023-201ENST00000606054 436 ntBASIC17.59■□□□□ 0.41
TIMP4Q99727 AL031985.4-201ENST00000642138 673 ntBASIC17.59■□□□□ 0.41
TIMP4Q99727 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 NEFHP1-201ENST00000412845 2629 ntBASIC17.59■□□□□ 0.41
TIMP4Q99727 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TIMP4Q99727 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TIMP4Q99727 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.58■□□□□ 0.41
TIMP4Q99727 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TIMP4Q99727 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TIMP4Q99727 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TIMP4Q99727 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.58■□□□□ 0.41
TIMP4Q99727 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TIMP4Q99727 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 UNC93B2-201ENST00000285383 730 ntBASIC17.58■□□□□ 0.4
TIMP4Q99727 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.58■□□□□ 0.4
TIMP4Q99727 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.58■□□□□ 0.4
TIMP4Q99727 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
TIMP4Q99727 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.58■□□□□ 0.4
TIMP4Q99727 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.58■□□□□ 0.4
TIMP4Q99727 RBM17P1-201ENST00000453646 1190 ntBASIC17.58■□□□□ 0.4
TIMP4Q99727 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.58■□□□□ 0.4
TIMP4Q99727 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.58■□□□□ 0.4
TIMP4Q99727 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.58■□□□□ 0.4
TIMP4Q99727 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms