Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
ERCC4Q92889 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.73■■□□□ 1.07
ERCC4Q92889 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.73■■□□□ 1.07
ERCC4Q92889 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.73■■□□□ 1.07
ERCC4Q92889 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.73■■□□□ 1.07
ERCC4Q92889 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.73■■□□□ 1.07
ERCC4Q92889 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.73■■□□□ 1.07
ERCC4Q92889 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.73■■□□□ 1.07
ERCC4Q92889 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.73■■□□□ 1.07
ERCC4Q92889 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
ERCC4Q92889 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
ERCC4Q92889 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
ERCC4Q92889 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.72■■□□□ 1.07
ERCC4Q92889 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.72■■□□□ 1.07
ERCC4Q92889 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.72■■□□□ 1.07
ERCC4Q92889 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.72■■□□□ 1.07
ERCC4Q92889 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.72■■□□□ 1.07
ERCC4Q92889 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.72■■□□□ 1.07
ERCC4Q92889 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.72■■□□□ 1.07
ERCC4Q92889 AL138781.1-201ENST00000566567 1274 ntBASIC21.72■■□□□ 1.07
ERCC4Q92889 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.72■■□□□ 1.07
ERCC4Q92889 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.72■■□□□ 1.07
ERCC4Q92889 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 MYC-209ENST00000641252 345 ntBASIC21.72■■□□□ 1.07
ERCC4Q92889 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
ERCC4Q92889 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
ERCC4Q92889 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.72■■□□□ 1.07
ERCC4Q92889 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
ERCC4Q92889 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.71■■□□□ 1.07
ERCC4Q92889 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
ERCC4Q92889 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.71■■□□□ 1.07
ERCC4Q92889 AC092368.3-202ENST00000574180 1591 ntBASIC21.71■■□□□ 1.07
ERCC4Q92889 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.71■■□□□ 1.07
ERCC4Q92889 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
ERCC4Q92889 NCF1B-203ENST00000435988 1254 ntBASIC21.71■■□□□ 1.07
ERCC4Q92889 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.71■■□□□ 1.07
ERCC4Q92889 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.71■■□□□ 1.07
ERCC4Q92889 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.71■■□□□ 1.07
ERCC4Q92889 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.71■■□□□ 1.07
ERCC4Q92889 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
ERCC4Q92889 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
ERCC4Q92889 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.71■■□□□ 1.07
ERCC4Q92889 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC21.71■■□□□ 1.07
ERCC4Q92889 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ERCC4Q92889 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
ERCC4Q92889 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.7■■□□□ 1.06
ERCC4Q92889 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
ERCC4Q92889 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.7■■□□□ 1.06
ERCC4Q92889 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
ERCC4Q92889 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.7■■□□□ 1.06
ERCC4Q92889 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.7■■□□□ 1.06
ERCC4Q92889 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ERCC4Q92889 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms