Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 NME3-204ENST00000563498 920 ntTSL 2 BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 AC026271.3-201ENST00000571884 352 ntBASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 RBM42-202ENST00000586618 771 ntTSL 3 BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.15
CCDC144BQ3MJ40 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.15
CCDC144BQ3MJ40 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CCDC144BQ3MJ40 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC144BQ3MJ40 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 YBX1P10-201ENST00000444752 975 ntBASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 B3GAT3P1-201ENST00000471720 806 ntBASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 RMI2-205ENST00000576027 818 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 GRAMD4P8-201ENST00000605465 1115 ntBASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 AC018553.1-201ENST00000616682 1458 ntBASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC144BQ3MJ40 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 KRT16P6-202ENST00000425692 1426 ntBASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 AC011506.1-201ENST00000474329 610 ntBASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 TPM1-226ENST00000560959 925 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 NEFHP1-201ENST00000412845 2629 ntBASIC22.24■■□□□ 1.15
CCDC144BQ3MJ40 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC144BQ3MJ40 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC144BQ3MJ40 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
CCDC144BQ3MJ40 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.23■■□□□ 1.15
CCDC144BQ3MJ40 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC144BQ3MJ40 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC144BQ3MJ40 AC093503.3-201ENST00000624917 2352 ntBASIC22.23■■□□□ 1.15
CCDC144BQ3MJ40 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms