Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.5■■□□□ 1.03
TPM4P67936 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 AC009113.1-201ENST00000570267 2443 ntBASIC21.5■■□□□ 1.03
TPM4P67936 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.5■■□□□ 1.03
TPM4P67936 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.49■■□□□ 1.03
TPM4P67936 TFP1-202ENST00000475455 1573 ntBASIC21.49■■□□□ 1.03
TPM4P67936 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 AL031598.1-201ENST00000561511 1773 ntBASIC21.49■■□□□ 1.03
TPM4P67936 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
TPM4P67936 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
TPM4P67936 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 WIZP1-201ENST00000531444 2299 ntBASIC21.49■■□□□ 1.03
TPM4P67936 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
TPM4P67936 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
TPM4P67936 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TPM4P67936 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.48■■□□□ 1.03
TPM4P67936 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
TPM4P67936 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
TPM4P67936 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.48■■□□□ 1.03
TPM4P67936 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 AL390961.4-201ENST00000623958 2535 ntBASIC21.48■■□□□ 1.03
TPM4P67936 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.48■■□□□ 1.03
TPM4P67936 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 OR10C1-204ENST00000622521 1039 ntBASIC21.48■■□□□ 1.03
TPM4P67936 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
TPM4P67936 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
TPM4P67936 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
TPM4P67936 IRX1P1-201ENST00000438849 1838 ntBASIC21.48■■□□□ 1.03
TPM4P67936 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
TPM4P67936 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TPM4P67936 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM4P67936 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.47■■□□□ 1.03
TPM4P67936 AC010980.2-201ENST00000587099 1412 ntBASIC21.47■■□□□ 1.03
TPM4P67936 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM4P67936 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC21.47■■□□□ 1.03
TPM4P67936 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.47■■□□□ 1.03
TPM4P67936 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.47■■□□□ 1.03
TPM4P67936 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.47■■□□□ 1.03
TPM4P67936 ZNRF2P3-201ENST00000424200 374 ntBASIC21.47■■□□□ 1.03
TPM4P67936 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.47■■□□□ 1.03
TPM4P67936 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM4P67936 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.47■■□□□ 1.03
TPM4P67936 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.47■■□□□ 1.03
TPM4P67936 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.47■■□□□ 1.03
TPM4P67936 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
TPM4P67936 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
TPM4P67936 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.47■■□□□ 1.03
TPM4P67936 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM4P67936 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM4P67936 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.46■■□□□ 1.03
TPM4P67936 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
TPM4P67936 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
TPM4P67936 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.46■■□□□ 1.03
TPM4P67936 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.46■■□□□ 1.03
TPM4P67936 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.46■■□□□ 1.03
TPM4P67936 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.46■■□□□ 1.03
TPM4P67936 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.46■■□□□ 1.03
TPM4P67936 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.46■■□□□ 1.03
TPM4P67936 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms