Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.3■□□□□ 0.36
LSM3P62310 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.3■□□□□ 0.36
LSM3P62310 AL356652.1-201ENST00000615962 565 ntBASIC17.3■□□□□ 0.36
LSM3P62310 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.3■□□□□ 0.36
LSM3P62310 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LSM3P62310 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
LSM3P62310 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.3■□□□□ 0.36
LSM3P62310 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LSM3P62310 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LSM3P62310 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.29■□□□□ 0.36
LSM3P62310 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LSM3P62310 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.29■□□□□ 0.36
LSM3P62310 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.29■□□□□ 0.36
LSM3P62310 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.29■□□□□ 0.36
LSM3P62310 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LSM3P62310 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.29■□□□□ 0.36
LSM3P62310 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.29■□□□□ 0.36
LSM3P62310 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.29■□□□□ 0.36
LSM3P62310 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.29■□□□□ 0.36
LSM3P62310 KRT87P-202ENST00000534226 1464 ntBASIC17.29■□□□□ 0.36
LSM3P62310 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.29■□□□□ 0.36
LSM3P62310 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LSM3P62310 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.28■□□□□ 0.36
LSM3P62310 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.28■□□□□ 0.36
LSM3P62310 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
LSM3P62310 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LSM3P62310 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.28■□□□□ 0.36
LSM3P62310 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.28■□□□□ 0.36
LSM3P62310 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.28■□□□□ 0.36
LSM3P62310 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
LSM3P62310 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 OR2A1-AS1-204ENST00000470435 602 ntBASIC17.28■□□□□ 0.36
LSM3P62310 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.28■□□□□ 0.36
LSM3P62310 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
LSM3P62310 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.28■□□□□ 0.36
LSM3P62310 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.28■□□□□ 0.36
LSM3P62310 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.28■□□□□ 0.36
LSM3P62310 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.28■□□□□ 0.36
LSM3P62310 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.28■□□□□ 0.36
LSM3P62310 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LSM3P62310 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.28■□□□□ 0.36
LSM3P62310 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LSM3P62310 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.27■□□□□ 0.36
LSM3P62310 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.27■□□□□ 0.36
LSM3P62310 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.27■□□□□ 0.36
LSM3P62310 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.27■□□□□ 0.36
LSM3P62310 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.27■□□□□ 0.36
LSM3P62310 PCDHA12-202ENST00000613593 2588 ntBASIC17.27■□□□□ 0.36
LSM3P62310 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
LSM3P62310 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LSM3P62310 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.27■□□□□ 0.36
LSM3P62310 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms