Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PTPN4P29074 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 C2orf69P4-201ENST00000565394 541 ntBASIC19.24■□□□□ 0.67
PTPN4P29074 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
PTPN4P29074 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.24■□□□□ 0.67
PTPN4P29074 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PTPN4P29074 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.24■□□□□ 0.67
PTPN4P29074 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PTPN4P29074 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.23■□□□□ 0.67
PTPN4P29074 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PTPN4P29074 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 AL133373.2-201ENST00000623187 2828 ntBASIC19.23■□□□□ 0.67
PTPN4P29074 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PTPN4P29074 PGM5P4-201ENST00000421970 445 ntBASIC19.23■□□□□ 0.67
PTPN4P29074 AL596275.1-201ENST00000423464 877 ntBASIC19.23■□□□□ 0.67
PTPN4P29074 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.23■□□□□ 0.67
PTPN4P29074 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 AC008550.1-201ENST00000511500 884 ntBASIC19.23■□□□□ 0.67
PTPN4P29074 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.23■□□□□ 0.67
PTPN4P29074 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.23■□□□□ 0.67
PTPN4P29074 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.23■□□□□ 0.67
PTPN4P29074 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.23■□□□□ 0.67
PTPN4P29074 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.23■□□□□ 0.67
PTPN4P29074 FAM197Y4-202ENST00000622692 608 ntBASIC19.23■□□□□ 0.67
PTPN4P29074 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.23■□□□□ 0.67
PTPN4P29074 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 AC087633.2-202ENST00000565166 1439 ntBASIC19.23■□□□□ 0.67
PTPN4P29074 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.23■□□□□ 0.67
PTPN4P29074 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PTPN4P29074 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.23■□□□□ 0.67
PTPN4P29074 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN4P29074 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN4P29074 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN4P29074 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.22■□□□□ 0.67
PTPN4P29074 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PTPN4P29074 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.22■□□□□ 0.67
PTPN4P29074 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
PTPN4P29074 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN4P29074 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.22■□□□□ 0.67
PTPN4P29074 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN4P29074 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 RPPH1-201ENST00000516869 333 ntBASIC19.22■□□□□ 0.67
PTPN4P29074 C1QBPP2-201ENST00000528754 825 ntBASIC19.22■□□□□ 0.67
PTPN4P29074 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.22■□□□□ 0.67
PTPN4P29074 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.22■□□□□ 0.67
PTPN4P29074 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.22■□□□□ 0.67
PTPN4P29074 RN7SL471P-201ENST00000580476 299 ntBASIC19.22■□□□□ 0.67
PTPN4P29074 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.22■□□□□ 0.67
PTPN4P29074 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PTPN4P29074 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN4P29074 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN4P29074 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PTPN4P29074 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PTPN4P29074 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
PTPN4P29074 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.21■□□□□ 0.67
PTPN4P29074 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
PTPN4P29074 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms