Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
VIMP08670 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.27■□□□□ 0.68
VIMP08670 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.27■□□□□ 0.68
VIMP08670 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.27■□□□□ 0.68
VIMP08670 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.27■□□□□ 0.68
VIMP08670 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.27■□□□□ 0.68
VIMP08670 PBX2P1-201ENST00000493219 1291 ntBASIC19.27■□□□□ 0.68
VIMP08670 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.27■□□□□ 0.68
VIMP08670 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.27■□□□□ 0.68
VIMP08670 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.27■□□□□ 0.68
VIMP08670 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.27■□□□□ 0.68
VIMP08670 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.27■□□□□ 0.68
VIMP08670 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.27■□□□□ 0.68
VIMP08670 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VIMP08670 CYP21A1P-202ENST00000354927 1481 ntBASIC19.27■□□□□ 0.67
VIMP08670 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.27■□□□□ 0.67
VIMP08670 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VIMP08670 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
VIMP08670 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
VIMP08670 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.27■□□□□ 0.67
VIMP08670 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.67
VIMP08670 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VIMP08670 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.27■□□□□ 0.67
VIMP08670 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.26■□□□□ 0.67
VIMP08670 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
VIMP08670 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 AC106739.1-201ENST00000617035 715 ntBASIC19.26■□□□□ 0.67
VIMP08670 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.26■□□□□ 0.67
VIMP08670 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
VIMP08670 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VIMP08670 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.25■□□□□ 0.67
VIMP08670 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.25■□□□□ 0.67
VIMP08670 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VIMP08670 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.25■□□□□ 0.67
VIMP08670 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
VIMP08670 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 HLA-G-202ENST00000376815 851 ntBASIC19.25■□□□□ 0.67
VIMP08670 HLA-G-203ENST00000376818 1127 ntBASIC19.25■□□□□ 0.67
VIMP08670 AC096631.2-201ENST00000436136 790 ntBASIC19.25■□□□□ 0.67
VIMP08670 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.25■□□□□ 0.67
VIMP08670 AP001330.3-201ENST00000520123 633 ntBASIC19.25■□□□□ 0.67
VIMP08670 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.25■□□□□ 0.67
VIMP08670 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VIMP08670 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VIMP08670 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VIMP08670 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
VIMP08670 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.25■□□□□ 0.67
VIMP08670 ABALON-201ENST00000629058 1903 ntBASIC19.25■□□□□ 0.67
VIMP08670 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.25■□□□□ 0.67
VIMP08670 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.25■□□□□ 0.67
VIMP08670 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
VIMP08670 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
VIMP08670 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.24■□□□□ 0.67
VIMP08670 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.24■□□□□ 0.67
VIMP08670 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.24■□□□□ 0.67
VIMP08670 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.24■□□□□ 0.67
VIMP08670 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VIMP08670 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 RASA4CP-201ENST00000424092 1398 ntBASIC19.24■□□□□ 0.67
VIMP08670 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms