Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC233702.5-201ENST00000584107 538 ntBASIC18.51■□□□□ 0.55
LDLRP01130 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.51■□□□□ 0.55
LDLRP01130 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LDLRP01130 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LDLRP01130 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.51■□□□□ 0.55
LDLRP01130 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.51■□□□□ 0.55
LDLRP01130 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.51■□□□□ 0.55
LDLRP01130 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
LDLRP01130 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.51■□□□□ 0.55
LDLRP01130 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.51■□□□□ 0.55
LDLRP01130 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.51■□□□□ 0.55
LDLRP01130 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 AC007613.1-201ENST00000572811 2597 ntBASIC18.5■□□□□ 0.55
LDLRP01130 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LDLRP01130 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.5■□□□□ 0.55
LDLRP01130 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.5■□□□□ 0.55
LDLRP01130 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.5■□□□□ 0.55
LDLRP01130 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 SOX15-203ENST00000570788 1093 ntBASIC18.5■□□□□ 0.55
LDLRP01130 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
LDLRP01130 AL589743.5-201ENST00000616611 1050 ntBASIC18.5■□□□□ 0.55
LDLRP01130 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
LDLRP01130 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
LDLRP01130 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LDLRP01130 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.5■□□□□ 0.55
LDLRP01130 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDLRP01130 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
LDLRP01130 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LDLRP01130 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.49■□□□□ 0.55
LDLRP01130 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.49■□□□□ 0.55
LDLRP01130 AC133561.5-201ENST00000635547 218 ntBASIC18.49■□□□□ 0.55
LDLRP01130 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LDLRP01130 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LDLRP01130 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LDLRP01130 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.49■□□□□ 0.55
LDLRP01130 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDLRP01130 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.49■□□□□ 0.55
LDLRP01130 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
LDLRP01130 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.48■□□□□ 0.55
LDLRP01130 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.48■□□□□ 0.55
LDLRP01130 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 RPS2P55-201ENST00000397318 883 ntBASIC18.48■□□□□ 0.55
LDLRP01130 TSPY7P-201ENST00000431358 1114 ntBASIC18.48■□□□□ 0.55
LDLRP01130 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 AC107956.1-201ENST00000494359 873 ntBASIC18.48■□□□□ 0.55
LDLRP01130 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.48■□□□□ 0.55
LDLRP01130 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.48■□□□□ 0.55
LDLRP01130 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.48■□□□□ 0.55
LDLRP01130 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms