Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.76■□□□□ 0.59
SDC3O75056 AC093458.2-201ENST00000623150 629 ntBASIC18.76■□□□□ 0.59
SDC3O75056 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SDC3O75056 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SDC3O75056 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.76■□□□□ 0.59
SDC3O75056 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SDC3O75056 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDC3O75056 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC3O75056 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
SDC3O75056 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SDC3O75056 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC3O75056 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDC3O75056 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDC3O75056 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SDC3O75056 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.75■□□□□ 0.59
SDC3O75056 KRT18P38-201ENST00000449496 1282 ntBASIC18.75■□□□□ 0.59
SDC3O75056 FAM86EP-206ENST00000510506 987 ntBASIC18.75■□□□□ 0.59
SDC3O75056 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.75■□□□□ 0.59
SDC3O75056 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SDC3O75056 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.75■□□□□ 0.59
SDC3O75056 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.75■□□□□ 0.59
SDC3O75056 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.75■□□□□ 0.59
SDC3O75056 IER3-202ENST00000376377 1350 ntBASIC18.75■□□□□ 0.59
SDC3O75056 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC3O75056 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC3O75056 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SDC3O75056 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDC3O75056 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SDC3O75056 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 AC099778.1-201ENST00000568593 1911 ntBASIC18.74■□□□□ 0.59
SDC3O75056 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SDC3O75056 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 GABARAPL3-202ENST00000624044 1851 ntBASIC18.74■□□□□ 0.59
SDC3O75056 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.74■□□□□ 0.59
SDC3O75056 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.74■□□□□ 0.59
SDC3O75056 AC009947.2-201ENST00000444014 672 ntBASIC18.74■□□□□ 0.59
SDC3O75056 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 KRT18P56-201ENST00000507275 550 ntBASIC18.74■□□□□ 0.59
SDC3O75056 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.74■□□□□ 0.59
SDC3O75056 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.74■□□□□ 0.59
SDC3O75056 AL121956.5-201ENST00000625261 221 ntBASIC18.74■□□□□ 0.59
SDC3O75056 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC3O75056 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.74■□□□□ 0.59
SDC3O75056 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.73■□□□□ 0.59
SDC3O75056 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.73■□□□□ 0.59
SDC3O75056 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.73■□□□□ 0.59
SDC3O75056 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.73■□□□□ 0.59
SDC3O75056 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.73■□□□□ 0.59
SDC3O75056 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.73■□□□□ 0.59
SDC3O75056 PRSS44-201ENST00000515154 1146 ntBASIC18.73■□□□□ 0.59
SDC3O75056 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.73■□□□□ 0.59
SDC3O75056 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.73■□□□□ 0.59
SDC3O75056 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SDC3O75056 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.73■□□□□ 0.59
SDC3O75056 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SDC3O75056 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SDC3O75056 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC3O75056 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.73■□□□□ 0.59
SDC3O75056 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SDC3O75056 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SDC3O75056 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SDC3O75056 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC3O75056 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.72■□□□□ 0.59
SDC3O75056 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.72■□□□□ 0.59
SDC3O75056 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
SDC3O75056 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.72■□□□□ 0.59
SDC3O75056 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.72■□□□□ 0.59
SDC3O75056 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC3O75056 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms