Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.36■□□□□ 0.37
SSX4O60224 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SSX4O60224 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.36■□□□□ 0.37
SSX4O60224 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 AC068880.1-201ENST00000507289 2297 ntBASIC17.36■□□□□ 0.37
SSX4O60224 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SSX4O60224 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SSX4O60224 AC116050.2-201ENST00000612102 1779 ntBASIC17.35■□□□□ 0.37
SSX4O60224 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SSX4O60224 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.35■□□□□ 0.37
SSX4O60224 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SSX4O60224 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.35■□□□□ 0.37
SSX4O60224 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.35■□□□□ 0.37
SSX4O60224 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.35■□□□□ 0.37
SSX4O60224 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.35■□□□□ 0.37
SSX4O60224 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.35■□□□□ 0.37
SSX4O60224 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.35■□□□□ 0.37
SSX4O60224 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.35■□□□□ 0.37
SSX4O60224 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.35■□□□□ 0.37
SSX4O60224 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.35■□□□□ 0.37
SSX4O60224 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
SSX4O60224 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.35■□□□□ 0.37
SSX4O60224 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SSX4O60224 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SSX4O60224 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
SSX4O60224 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SSX4O60224 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SSX4O60224 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.34■□□□□ 0.37
SSX4O60224 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SSX4O60224 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.34■□□□□ 0.37
SSX4O60224 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 RPPH1-201ENST00000516869 333 ntBASIC17.34■□□□□ 0.37
SSX4O60224 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.34■□□□□ 0.37
SSX4O60224 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SSX4O60224 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSX4O60224 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.33■□□□□ 0.37
SSX4O60224 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.33■□□□□ 0.37
SSX4O60224 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
SSX4O60224 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
SSX4O60224 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.33■□□□□ 0.37
SSX4O60224 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.33■□□□□ 0.37
SSX4O60224 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX4O60224 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.33■□□□□ 0.37
SSX4O60224 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SSX4O60224 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.33■□□□□ 0.36
SSX4O60224 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SSX4O60224 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms