Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
RIPK2O43353 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.5■□□□□ 0.71
RIPK2O43353 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 LTB4R2-202ENST00000528054 3092 ntBASIC19.5■□□□□ 0.71
RIPK2O43353 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.5■□□□□ 0.71
RIPK2O43353 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.5■□□□□ 0.71
RIPK2O43353 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.5■□□□□ 0.71
RIPK2O43353 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.5■□□□□ 0.71
RIPK2O43353 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.5■□□□□ 0.71
RIPK2O43353 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.5■□□□□ 0.71
RIPK2O43353 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.5■□□□□ 0.71
RIPK2O43353 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.5■□□□□ 0.71
RIPK2O43353 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.5■□□□□ 0.71
RIPK2O43353 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.5■□□□□ 0.71
RIPK2O43353 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RIPK2O43353 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
RIPK2O43353 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
RIPK2O43353 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 AP000997.3-201ENST00000623333 2250 ntBASIC19.49■□□□□ 0.71
RIPK2O43353 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.49■□□□□ 0.71
RIPK2O43353 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
RIPK2O43353 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.49■□□□□ 0.71
RIPK2O43353 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.49■□□□□ 0.71
RIPK2O43353 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.49■□□□□ 0.71
RIPK2O43353 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.49■□□□□ 0.71
RIPK2O43353 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
RIPK2O43353 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.49■□□□□ 0.71
RIPK2O43353 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
RIPK2O43353 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RIPK2O43353 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.48■□□□□ 0.71
RIPK2O43353 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.48■□□□□ 0.71
RIPK2O43353 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.48■□□□□ 0.71
RIPK2O43353 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.48■□□□□ 0.71
RIPK2O43353 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.48■□□□□ 0.71
RIPK2O43353 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.48■□□□□ 0.71
RIPK2O43353 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.48■□□□□ 0.71
RIPK2O43353 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 AL512625.2-201ENST00000417533 625 ntBASIC19.48■□□□□ 0.71
RIPK2O43353 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.48■□□□□ 0.71
RIPK2O43353 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 AC083906.6-201ENST00000641366 219 ntBASIC19.48■□□□□ 0.71
RIPK2O43353 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
RIPK2O43353 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.48■□□□□ 0.71
RIPK2O43353 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RIPK2O43353 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.48■□□□□ 0.71
RIPK2O43353 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.47■□□□□ 0.71
RIPK2O43353 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.47■□□□□ 0.71
RIPK2O43353 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.47■□□□□ 0.71
RIPK2O43353 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.47■□□□□ 0.71
RIPK2O43353 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RIPK2O43353 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
RIPK2O43353 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms