Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.98■□□□□ 0.95
CLDN3O15551 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.98■□□□□ 0.95
CLDN3O15551 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.98■□□□□ 0.95
CLDN3O15551 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.98■□□□□ 0.95
CLDN3O15551 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
CLDN3O15551 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
CLDN3O15551 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.98■□□□□ 0.95
CLDN3O15551 MMP23A-201ENST00000234610 1017 ntBASIC20.98■□□□□ 0.95
CLDN3O15551 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 MIR1238-201ENST00000408483 83 ntBASIC20.98■□□□□ 0.95
CLDN3O15551 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN3O15551 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
CLDN3O15551 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CLDN3O15551 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CLDN3O15551 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CLDN3O15551 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.97■□□□□ 0.95
CLDN3O15551 FITM1-202ENST00000559294 800 ntBASIC20.97■□□□□ 0.95
CLDN3O15551 SLC25A1P4-201ENST00000567977 778 ntBASIC20.97■□□□□ 0.95
CLDN3O15551 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
CLDN3O15551 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.97■□□□□ 0.95
CLDN3O15551 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.97■□□□□ 0.95
CLDN3O15551 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.97■□□□□ 0.95
CLDN3O15551 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN3O15551 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 Z82202.1-201ENST00000623446 1880 ntBASIC20.96■□□□□ 0.95
CLDN3O15551 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.96■□□□□ 0.95
CLDN3O15551 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.96■□□□□ 0.95
CLDN3O15551 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.96■□□□□ 0.95
CLDN3O15551 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.96■□□□□ 0.95
CLDN3O15551 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.96■□□□□ 0.95
CLDN3O15551 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.96■□□□□ 0.95
CLDN3O15551 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN3O15551 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.96■□□□□ 0.95
CLDN3O15551 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.96■□□□□ 0.95
CLDN3O15551 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.96■□□□□ 0.95
CLDN3O15551 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
CLDN3O15551 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CLDN3O15551 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN3O15551 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 CRYGFP-201ENST00000418459 633 ntBASIC20.95■□□□□ 0.94
CLDN3O15551 AL390955.1-201ENST00000428694 934 ntBASIC20.95■□□□□ 0.94
CLDN3O15551 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN3O15551 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CLDN3O15551 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.95■□□□□ 0.94
CLDN3O15551 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN3O15551 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN3O15551 AP005242.2-201ENST00000580065 1175 ntBASIC20.95■□□□□ 0.94
CLDN3O15551 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.95■□□□□ 0.94
CLDN3O15551 AC116562.4-201ENST00000641316 2276 ntBASIC20.95■□□□□ 0.94
CLDN3O15551 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN3O15551 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.95■□□□□ 0.94
CLDN3O15551 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.95■□□□□ 0.94
CLDN3O15551 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CLDN3O15551 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.95■□□□□ 0.94
CLDN3O15551 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN3O15551 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
CLDN3O15551 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN3O15551 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms