Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC112220.1-201ENST00000434628 355 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC2.6□□□□□ -1.99
COL6A3P12111 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC2.6□□□□□ -1.99
COL6A3P12111 AC090281.1-201ENST00000523019 276 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A3P12111 AC002984.1-201ENST00000591692 448 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 AL162233.1-201ENST00000620014 944 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC2.6□□□□□ -1.99
COL6A3P12111 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC2.6□□□□□ -1.99
COL6A3P12111 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC2.6□□□□□ -1.99
COL6A3P12111 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A3P12111 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A3P12111 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC2.6□□□□□ -1.99
COL6A3P12111 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.6□□□□□ -1.99
COL6A3P12111 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A3P12111 HSPE1P18-201ENST00000517602 280 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.6□□□□□ -1.99
COL6A3P12111 AP001542.2-201ENST00000593141 364 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 RMST_8.1-201ENST00000610287 165 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.6□□□□□ -1.99
COL6A3P12111 AL356490.1-201ENST00000623079 479 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 AC004925.1-201ENST00000624256 2706 ntBASIC2.6□□□□□ -1.99
COL6A3P12111 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A3P12111 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
COL6A3P12111 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A3P12111 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL6A3P12111 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
COL6A3P12111 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
COL6A3P12111 MUC2-202ENST00000613187 4845 ntBASIC2.59□□□□□ -1.99
COL6A3P12111 RPL7P54-201ENST00000438336 674 ntBASIC2.59□□□□□ -1.99
COL6A3P12111 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.59□□□□□ -1.99
COL6A3P12111 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.59□□□□□ -1.99
COL6A3P12111 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL6A3P12111 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC2.59□□□□□ -1.99
COL6A3P12111 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL6A3P12111 AC025125.1-201ENST00000624743 1922 ntBASIC2.59□□□□□ -1.99
COL6A3P12111 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
COL6A3P12111 RN7SL442P-201ENST00000473804 320 ntBASIC2.59□□□□□ -1.99
COL6A3P12111 WISP1-OT1-201ENST00000602893 642 ntBASIC2.59□□□□□ -1.99
COL6A3P12111 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC2.59□□□□□ -1.99
COL6A3P12111 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
COL6A3P12111 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL6A3P12111 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC2.59□□□□□ -2
COL6A3P12111 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.59□□□□□ -2
COL6A3P12111 SAGE4P-201ENST00000442271 3381 ntBASIC2.59□□□□□ -2
COL6A3P12111 RNU6-457P-201ENST00000363999 107 ntBASIC2.59□□□□□ -2
COL6A3P12111 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC2.59□□□□□ -2
COL6A3P12111 MTCO3P11-201ENST00000455103 774 ntBASIC2.59□□□□□ -2
COL6A3P12111 AC133473.1-201ENST00000455173 299 ntBASIC2.59□□□□□ -2
COL6A3P12111 RPS15AP17-201ENST00000470598 390 ntBASIC2.59□□□□□ -2
COL6A3P12111 AP000919.1-202ENST00000581139 1264 ntBASIC2.59□□□□□ -2
COL6A3P12111 AC006111.3-201ENST00000622137 383 ntBASIC2.59□□□□□ -2
COL6A3P12111 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
COL6A3P12111 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC2.59□□□□□ -2
COL6A3P12111 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
COL6A3P12111 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL6A3P12111 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL6A3P12111 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL6A3P12111 RNY1-201ENST00000364228 113 ntBASIC2.58□□□□□ -2
COL6A3P12111 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.58□□□□□ -2
COL6A3P12111 AL024509.2-201ENST00000493462 493 ntBASIC2.58□□□□□ -2
COL6A3P12111 AK6P1-201ENST00000540219 478 ntBASIC2.58□□□□□ -2
COL6A3P12111 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.58□□□□□ -2
COL6A3P12111 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
COL6A3P12111 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
COL6A3P12111 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
COL6A3P12111 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.58□□□□□ -2
COL6A3P12111 AL035551.1-201ENST00000446931 348 ntBASIC2.58□□□□□ -2
COL6A3P12111 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC2.58□□□□□ -2
COL6A3P12111 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.58□□□□□ -2
COL6A3P12111 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC2.58□□□□□ -2
COL6A3P12111 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC2.58□□□□□ -2
COL6A3P12111 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL6A3P12111 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 RNU1-35P-201ENST00000362782 153 ntBASIC2.57□□□□□ -2
COL6A3P12111 RN7SKP58-201ENST00000411010 305 ntBASIC2.57□□□□□ -2
COL6A3P12111 AC011816.1-201ENST00000441346 546 ntBASIC2.57□□□□□ -2
COL6A3P12111 LINC00901.1-201ENST00000617252 152 ntBASIC2.57□□□□□ -2
COL6A3P12111 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
COL6A3P12111 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 HMGB1P25-201ENST00000468402 607 ntBASIC2.57□□□□□ -2
COL6A3P12111 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.57□□□□□ -2
COL6A3P12111 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.57□□□□□ -2
COL6A3P12111 RPS3AP4-201ENST00000555161 764 ntBASIC2.57□□□□□ -2
COL6A3P12111 AC016542.2-201ENST00000624201 619 ntBASIC2.57□□□□□ -2
COL6A3P12111 AP000526.1-201ENST00000603308 1388 ntBASIC2.57□□□□□ -2
COL6A3P12111 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
COL6A3P12111 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.57□□□□□ -2
COL6A3P12111 RPL36AP51-201ENST00000487216 318 ntBASIC2.57□□□□□ -2
COL6A3P12111 AC104027.1-201ENST00000521887 300 ntBASIC2.57□□□□□ -2
COL6A3P12111 SUB1P3-201ENST00000564581 315 ntBASIC2.57□□□□□ -2
COL6A3P12111 AC008277.2-201ENST00000605196 797 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms