RNA–Protein interactions for RNA: ENST00000375427.4

SCN2A-202, Transcript of sodium voltage-gated channel alpha subunit 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN2A, Length 8,553 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2A-202ENST00000375427 PELP1Q8IZL8 1130 aaKnown RBP10.33□□□□□ -0.76
SCN2A-202ENST00000375427 MYT1Q01538 1121 aa10.13□□□□□ -0.79
SCN2A-202ENST00000375427 TTBK1Q5TCY1 1321 aaPredicted RBP9.8□□□□□ -0.84
SCN2A-202ENST00000375427 ERICH6Q7L0X2 663 aa9.78□□□□□ -0.84
SCN2A-202ENST00000375427 YTHDC1Q96MU7 727 aaKnown RBP9.76□□□□□ -0.85
SCN2A-202ENST00000375427 CCER1Q8TC90 406 aaPredicted RBP9.74□□□□□ -0.85
SCN2A-202ENST00000375427 RANGAP1P46060 587 aaPredicted RBP9.28□□□□□ -0.92
SCN2A-202ENST00000375427 DAXXQ9UER7 740 aaPredicted RBP9.16□□□□□ -0.94
SCN2A-202ENST00000375427 CENPBP07199 599 aaPredicted RBP9.16□□□□□ -0.94
SCN2A-202ENST00000375427 GLIPR1L2Q4G1C9 344 aa9.1□□□□□ -0.95
SCN2A-202ENST00000375427 NEFLP07196 543 aa9.05□□□□□ -0.96
SCN2A-202ENST00000375427 RTL5Q5HYW3 569 aaPredicted RBP8.97□□□□□ -0.97
SCN2A-202ENST00000375427 CLSPNQ9HAW4 1339 aa8.94□□□□□ -0.98
SCN2A-202ENST00000375427 MYT1LQ9UL68 1186 aa8.92□□□□□ -0.98
SCN2A-202ENST00000375427 ZNF316A6NFI3 1004 aaPredicted RBP8.84□□□□□ -0.99
SCN2A-202ENST00000375427 POLR3GLQ9BT43 218 aa8.78□□□□□ -1
SCN2A-202ENST00000375427 EIF5BO60841 1220 aaKnown RBP8.75□□□□□ -1.01
SCN2A-202ENST00000375427 DCAF8L2P0C7V8 631 aa8.74□□□□□ -1.01
SCN2A-202ENST00000375427 TNNT2P45379 298 aaPredicted RBP8.65□□□□□ -1.02
SCN2A-202ENST00000375427 APLP2Q06481 763 aa8.61□□□□□ -1.03
SCN2A-202ENST00000375427 FAM9AQ8IZU1 332 aaPredicted RBP8.61□□□□□ -1.03
SCN2A-202ENST00000375427 ZEB1P37275 1124 aaPredicted RBP8.6□□□□□ -1.03
SCN2A-202ENST00000375427 ANP32BQ92688 251 aaKnown RBP8.6□□□□□ -1.03
SCN2A-202ENST00000375427 CDK11BP21127 795 aaKnown RBP8.59□□□□□ -1.03
SCN2A-202ENST00000375427 ZNF326Q5BKZ1 582 aaKnown RBP8.53□□□□□ -1.04
SCN2A-202ENST00000375427 CALRP27797 417 aaKnown RBP8.5□□□□□ -1.05
SCN2A-202ENST00000375427 EHMT2Q96KQ7 1210 aa8.5□□□□□ -1.05
SCN2A-202ENST00000375427 NCLP19338 710 aaKnown RBP8.46□□□□□ -1.05
SCN2A-202ENST00000375427 TRIM44Q96DX7 344 aaPredicted RBP8.46□□□□□ -1.05
SCN2A-202ENST00000375427 SLC24A1O60721 1099 aa8.42□□□□□ -1.06
SCN2A-202ENST00000375427 CDK11AQ9UQ88 783 aaPredicted RBP8.39□□□□□ -1.07
SCN2A-202ENST00000375427 ATP1B4Q9UN42 357 aaPredicted RBP8.37□□□□□ -1.07
SCN2A-202ENST00000375427 PTMSP20962 102 aa8.33□□□□□ -1.08
SCN2A-202ENST00000375427 PCGF6Q9BYE7 350 aa8.33□□□□□ -1.08
SCN2A-202ENST00000375427 ZBTB47Q9UFB7 747 aaPredicted RBP8.33□□□□□ -1.08
SCN2A-202ENST00000375427 ANP32AP39687 249 aaKnown RBP8.27□□□□□ -1.09
SCN2A-202ENST00000375427 AMER1Q5JTC6 1135 aaPredicted RBP8.21□□□□□ -1.1
SCN2A-202ENST00000375427 HSP90AA1P07900 732 aaKnown RBP8.2□□□□□ -1.1
SCN2A-202ENST00000375427 NEFMP07197 916 aa8.2□□□□□ -1.1
SCN2A-202ENST00000375427 TNNT3P45378 269 aaPredicted RBP8.17□□□□□ -1.1
SCN2A-202ENST00000375427 STK11IPQ8N1F8 1099 aa8.16□□□□□ -1.1
SCN2A-202ENST00000375427 GOLGA6L22H0YM25 854 aa8.16□□□□□ -1.1
SCN2A-202ENST00000375427 TRIM26Q12899 539 aaPredicted RBP8.16□□□□□ -1.1
SCN2A-202ENST00000375427 ANP32EQ9BTT0 268 aa8.11□□□□□ -1.11
SCN2A-202ENST00000375427 MEX3CQ5U5Q3 659 aaKnown RBP8.1□□□□□ -1.11
SCN2A-202ENST00000375427 UPF2Q9HAU5 1272 aaKnown RBP8.09□□□□□ -1.11
SCN2A-202ENST00000375427 APPP05067 770 aa8.08□□□□□ -1.12
SCN2A-202ENST00000375427 ERICH6BQ5W0A0 696 aa8.07□□□□□ -1.12
SCN2A-202ENST00000375427 DNTTIP2Q5QJE6 756 aaKnown RBP8.06□□□□□ -1.12
SCN2A-202ENST00000375427 PNNQ9H307 717 aaKnown RBP8.05□□□□□ -1.12
SCN2A-202ENST00000375427 LAS1LQ9Y4W2 734 aaKnown RBP8.05□□□□□ -1.12
SCN2A-202ENST00000375427 SUPT5HO00267 1087 aaKnown RBP8.04□□□□□ -1.12
SCN2A-202ENST00000375427 SETQ01105 290 aaPredicted RBP8.03□□□□□ -1.12
SCN2A-202ENST00000375427 NAP1L5Q96NT1 182 aaPredicted RBP8.03□□□□□ -1.12
SCN2A-202ENST00000375427 NEFHP12036 1026 aa8.01□□□□□ -1.13
SCN2A-202ENST00000375427 CNGB1Q14028 1251 aaPredicted RBP8□□□□□ -1.13
SCN2A-202ENST00000375427 CHAF1AQ13111 956 aaPredicted RBP8□□□□□ -1.13
SCN2A-202ENST00000375427 L1TD1Q5T7N2 865 aaKnown RBP8□□□□□ -1.13
SCN2A-202ENST00000375427 CANXP27824 592 aaKnown RBP8□□□□□ -1.13
SCN2A-202ENST00000375427 GOLGA6L1Q8N7Z2 621 aa7.99□□□□□ -1.13
SCN2A-202ENST00000375427 ARID4BQ4LE39 1312 aaPredicted RBP7.99□□□□□ -1.13
SCN2A-202ENST00000375427 SLC4A1APQ9BWU0 796 aaKnown RBP7.98□□□□□ -1.13
SCN2A-202ENST00000375427 ARXQ96QS3 562 aa7.98□□□□□ -1.13
SCN2A-202ENST00000375427 PTMAP06454 111 aaKnown RBP7.97□□□□□ -1.13
SCN2A-202ENST00000375427 A0A0U1RQG5 324 aaPredicted RBP7.97□□□□□ -1.13
SCN2A-202ENST00000375427 ZRSR1Q15695 479 aaKnown RBP7.96□□□□□ -1.13
SCN2A-202ENST00000375427 GOLGA6L6A8MZA4 724 aa7.96□□□□□ -1.13
SCN2A-202ENST00000375427 NEUROD1Q13562 356 aa7.96□□□□□ -1.13
SCN2A-202ENST00000375427 NRDCO43847 1150 aa7.96□□□□□ -1.14
SCN2A-202ENST00000375427 HMGB1P09429 215 aaKnown RBP7.96□□□□□ -1.14
SCN2A-202ENST00000375427 NPM2Q86SE8 214 aaKnown RBP7.95□□□□□ -1.14
SCN2A-202ENST00000375427 NBR1Q14596 966 aa7.95□□□□□ -1.14
SCN2A-202ENST00000375427 USP35Q9P2H5 1018 aa7.95□□□□□ -1.14
SCN2A-202ENST00000375427 GOLGA6L4A6NEF3 574 aa7.93□□□□□ -1.14
SCN2A-202ENST00000375427 LMOD2Q6P5Q4 547 aa7.92□□□□□ -1.14
SCN2A-202ENST00000375427 BCL11AQ9H165 835 aa7.91□□□□□ -1.14
SCN2A-202ENST00000375427 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.9□□□□□ -1.14
SCN2A-202ENST00000375427 BCANQ96GW7 911 aa7.89□□□□□ -1.15
SCN2A-202ENST00000375427 GTF3C3Q9Y5Q9 886 aa7.88□□□□□ -1.15
SCN2A-202ENST00000375427 NOC3LQ8WTT2 800 aaKnown RBP7.88□□□□□ -1.15
SCN2A-202ENST00000375427 WDR43Q15061 677 aaKnown RBP eCLIP7.87□□□□□ -1.15
SCN2A-202ENST00000375427 HRCP23327 699 aa7.86□□□□□ -1.15
SCN2A-202ENST00000375427 ANP32CO43423 234 aa7.86□□□□□ -1.15
SCN2A-202ENST00000375427 RRP12Q5JTH9 1297 aaKnown RBP7.85□□□□□ -1.15
SCN2A-202ENST00000375427 HAP1P54257 671 aaPredicted RBP7.84□□□□□ -1.15
SCN2A-202ENST00000375427 BECN1Q14457 450 aa7.83□□□□□ -1.16
SCN2A-202ENST00000375427 DIEXFQ68CQ4 756 aaKnown RBP7.82□□□□□ -1.16
SCN2A-202ENST00000375427 PODXL2Q9NZ53 605 aa7.82□□□□□ -1.16
SCN2A-202ENST00000375427 MSNP26038 577 aaKnown RBP7.82□□□□□ -1.16
SCN2A-202ENST00000375427 PRM3Q9NNZ6 103 aa7.82□□□□□ -1.16
SCN2A-202ENST00000375427 KIAA2012Q0VF49 1180 aa7.81□□□□□ -1.16
SCN2A-202ENST00000375427 ZNF526Q8TF50 670 aaPredicted RBP7.8□□□□□ -1.16
SCN2A-202ENST00000375427 NCBP3Q53F19 620 aaKnown RBP7.8□□□□□ -1.16
SCN2A-202ENST00000375427 PPM1GO15355 546 aaPredicted RBP7.8□□□□□ -1.16
SCN2A-202ENST00000375427 C14orf37Q86TY3 774 aa7.8□□□□□ -1.16
SCN2A-202ENST00000375427 DDRGK1Q96HY6 314 aa7.79□□□□□ -1.16
SCN2A-202ENST00000375427 KAT6BQ8WYB5 2073 aa7.79□□□□□ -1.16
SCN2A-202ENST00000375427 GOLGA6L3A6NEY3 463 aa7.76□□□□□ -1.17
SCN2A-202ENST00000375427 HMMRO75330 724 aa7.75□□□□□ -1.17
SCN2A-202ENST00000375427 TAF7LQ5H9L4 462 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms