Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 VN1R104P-201ENST00000505115 1009 ntBASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AC136777.2-201ENST00000522979 358 ntBASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AC022882.1-201ENST00000532142 501 ntBASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 RPL23AP92-201ENST00000603609 255 ntBASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AL354984.3-201ENST00000604803 325 ntBASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AC133644.2-201ENST00000608142 540 ntBASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AL442128.2-201ENST00000620246 1824 ntBASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SH3RF1Q7Z6J0 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 Y_RNA.152-201ENST00000363578 100 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RNA5SP91-201ENST00000390902 119 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RNU6-1109P-201ENST00000391187 107 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 DSTNP4-201ENST00000399472 474 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AL049697.2-201ENST00000403708 294 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 MIR548I2-201ENST00000408348 149 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RNU6-101P-201ENST00000410323 104 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RN7SKP17-201ENST00000411242 351 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RPSAP35-201ENST00000413753 818 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 OR2AS1P-201ENST00000427827 319 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AL590233.1-201ENST00000430017 456 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AL451139.1-201ENST00000434718 346 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RPL23AP89-201ENST00000439324 255 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RPL12P3-201ENST00000440080 396 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC020550.1-201ENST00000447385 163 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC021382.1-201ENST00000483523 359 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC116655.1-201ENST00000508324 901 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RNU6-615P-201ENST00000516065 106 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 OR8R1P-201ENST00000543943 764 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC103710.2-201ENST00000609912 942 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 Mico1.1-201ENST00000611698 204 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 ATP5A1P2-202ENST00000616464 443 ntBASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF734P-201ENST00000419494 1534 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 HSPA8P14-201ENST00000552265 1805 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms