Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC109347.2-201ENST00000610220 349 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
HOXD3P31249 MIR6864-201ENST00000617935 70 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC072046.2-201ENST00000618366 268 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXD3P31249 CYP3A51P-201ENST00000633513 256 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 MIR6863-201ENST00000636112 90 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC004520.1-201ENST00000608362 1413 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD3P31249 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC022893.2-201ENST00000564832 3296 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXD3P31249 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXD3P31249 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXD3P31249 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXD3P31249 Y_RNA.296-201ENST00000364930 108 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 RNU6-867P-201ENST00000364956 107 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 RNU4-12P-201ENST00000365233 139 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 Y_RNA.372-201ENST00000365599 102 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXD3P31249 AL357515.1-201ENST00000402967 542 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AL024474.1-201ENST00000404655 591 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 SPA17P1-201ENST00000416656 452 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 USP9YP18-201ENST00000425912 695 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 OR2B7P-201ENST00000429302 934 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC092162.1-201ENST00000432828 434 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXD3P31249 RPL23AP74-201ENST00000437246 471 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 RPL22P17-201ENST00000438729 315 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 FAM103A2P-201ENST00000444122 354 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXD3P31249 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXD3P31249 HCG17-214ENST00000453558 732 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.75□□□□□ -1.81
HOXD3P31249 AL513533.1-201ENST00000453728 415 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 RPL38P1-201ENST00000460914 211 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 RPL12P20-201ENST00000475538 479 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC068587.1-201ENST00000483613 781 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC116353.2-201ENST00000505332 712 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC016065.2-201ENST00000514530 444 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 RNU6-1003P-201ENST00000517099 105 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 Y_RNA.719-201ENST00000517156 106 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC022790.1-201ENST00000522872 204 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXD3P31249 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXD3P31249 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 IMMP1LP1-201ENST00000605170 488 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AL365503.1-201ENST00000605247 905 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AL391358.1-201ENST00000605342 190 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AL159169.3-201ENST00000608871 561 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC091304.9-201ENST00000612091 226 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC083809.1-201ENST00000615051 472 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 BX005214.3-202ENST00000619809 325 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC009268.2-201ENST00000621925 457 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 CR381572.2-201ENST00000624852 397 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 AC010928.1-201ENST00000592477 1447 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXD3P31249 ADAM5-202ENST00000399789 1942 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 AL049780.3-201ENST00000624612 1583 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
HOXD3P31249 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXD3P31249 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXD3P31249 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXD3P31249 ELL2P4-201ENST00000446870 1376 ntBASIC3.75□□□□□ -1.81
HOXD3P31249 AC008758.3-201ENST00000507003 1829 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 ZNF652P1-201ENST00000442420 1309 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 MFSD8-216ENST00000641147 4009 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 Y_RNA.46-201ENST00000362695 102 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 Y_RNA.256-201ENST00000364594 104 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms