Protein–RNA interactions for Protein: Q9Y446

PKP3, Plakophilin-3, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3Q9Y446 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 AC005332.7-201ENST00000614046 2005 ntBASIC19.3■□□□□ 0.68
PKP3Q9Y446 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 AL032819.2-201ENST00000624543 2162 ntBASIC19.3■□□□□ 0.68
PKP3Q9Y446 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 AC131212.4-201ENST00000623606 975 ntBASIC19.3■□□□□ 0.68
PKP3Q9Y446 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PKP3Q9Y446 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKP3Q9Y446 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 SDHAP1-207ENST00000440850 2000 ntBASIC19.29■□□□□ 0.68
PKP3Q9Y446 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 KRT16P1-201ENST00000399124 1418 ntBASIC19.29■□□□□ 0.68
PKP3Q9Y446 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 AC073195.1-201ENST00000607241 877 ntBASIC19.29■□□□□ 0.68
PKP3Q9Y446 AP001412.1-201ENST00000608405 714 ntBASIC19.29■□□□□ 0.68
PKP3Q9Y446 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 AP006294.2-201ENST00000641667 209 ntBASIC19.29■□□□□ 0.68
PKP3Q9Y446 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKP3Q9Y446 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PKP3Q9Y446 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 RPS2P4-201ENST00000476944 856 ntBASIC19.28■□□□□ 0.68
PKP3Q9Y446 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKP3Q9Y446 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PKP3Q9Y446 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 AC120498.9-201ENST00000339021 3867 ntBASIC19.27■□□□□ 0.68
PKP3Q9Y446 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKP3Q9Y446 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKP3Q9Y446 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKP3Q9Y446 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 RPS2P55-201ENST00000397318 883 ntBASIC19.27■□□□□ 0.68
PKP3Q9Y446 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKP3Q9Y446 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PKP3Q9Y446 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PKP3Q9Y446 AC107956.1-201ENST00000494359 873 ntBASIC19.27■□□□□ 0.68
PKP3Q9Y446 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms