Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.93■□□□□ 0.3
MMP28Q9H239 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 AC009053.2-201ENST00000563701 2365 ntBASIC16.93■□□□□ 0.3
MMP28Q9H239 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
MMP28Q9H239 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
MMP28Q9H239 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
MMP28Q9H239 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
MMP28Q9H239 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MMP28Q9H239 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MMP28Q9H239 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.92■□□□□ 0.3
MMP28Q9H239 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.92■□□□□ 0.3
MMP28Q9H239 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
MMP28Q9H239 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC16.92■□□□□ 0.3
MMP28Q9H239 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.92■□□□□ 0.3
MMP28Q9H239 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.92■□□□□ 0.3
MMP28Q9H239 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
MMP28Q9H239 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.92■□□□□ 0.3
MMP28Q9H239 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
MMP28Q9H239 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
MMP28Q9H239 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.92■□□□□ 0.3
MMP28Q9H239 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MMP28Q9H239 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
MMP28Q9H239 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.91■□□□□ 0.3
MMP28Q9H239 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.91■□□□□ 0.3
MMP28Q9H239 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MMP28Q9H239 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.91■□□□□ 0.3
MMP28Q9H239 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.91■□□□□ 0.3
MMP28Q9H239 AC080038.1-201ENST00000611274 1154 ntBASIC16.91■□□□□ 0.3
MMP28Q9H239 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MMP28Q9H239 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MMP28Q9H239 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.91■□□□□ 0.3
MMP28Q9H239 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.91■□□□□ 0.3
MMP28Q9H239 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MMP28Q9H239 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
MMP28Q9H239 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 TNRC18P3-201ENST00000441896 2691 ntBASIC16.9■□□□□ 0.3
MMP28Q9H239 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
MMP28Q9H239 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.9■□□□□ 0.3
MMP28Q9H239 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.9■□□□□ 0.3
MMP28Q9H239 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.9■□□□□ 0.3
MMP28Q9H239 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.9■□□□□ 0.3
MMP28Q9H239 AC243732.1-201ENST00000612648 864 ntBASIC16.9■□□□□ 0.3
MMP28Q9H239 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.9■□□□□ 0.3
MMP28Q9H239 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.9■□□□□ 0.3
MMP28Q9H239 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
MMP28Q9H239 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MMP28Q9H239 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms