Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 TSPY15P-201ENST00000457163 923 ntBASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 B3GAT3P1-201ENST00000471720 806 ntBASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 AC011506.1-201ENST00000474329 610 ntBASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 RCC2P6-201ENST00000526625 1557 ntBASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD1Q96NR3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 UNC93B2-201ENST00000285383 730 ntBASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 AC004951.3-201ENST00000418645 1148 ntBASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 AC011298.2-201ENST00000617989 482 ntBASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 AC104417.2-201ENST00000562989 1793 ntBASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD1Q96NR3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 AC007952.6-201ENST00000573168 2673 ntBASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 AC003957.1-201ENST00000625108 2673 ntBASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 AC116562.4-201ENST00000641316 2276 ntBASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 MESTP1-201ENST00000404287 994 ntBASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms