Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 PKD1P6-201ENST00000343738 4769 ntBASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 KRT18P38-201ENST00000449496 1282 ntBASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 AL023973.1-201ENST00000624619 620 ntBASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.57■□□□□ 0.88
CTC1Q2NKJ3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.56■□□□□ 0.88
CTC1Q2NKJ3 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 Z85996.1-201ENST00000494644 937 ntBASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
CTC1Q2NKJ3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 AL020996.1-203ENST00000536896 2307 ntBASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 CA15P1-201ENST00000481698 905 ntBASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTC1Q2NKJ3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTC1Q2NKJ3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTC1Q2NKJ3 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms