Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PEX3P56589 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PEX3P56589 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PEX3P56589 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PEX3P56589 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PEX3P56589 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PEX3P56589 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.2■□□□□ 0.98
PEX3P56589 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
PEX3P56589 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.2■□□□□ 0.98
PEX3P56589 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
PEX3P56589 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.19■□□□□ 0.98
PEX3P56589 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PEX3P56589 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.19■□□□□ 0.98
PEX3P56589 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
PEX3P56589 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.19■□□□□ 0.98
PEX3P56589 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.19■□□□□ 0.98
PEX3P56589 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.19■□□□□ 0.98
PEX3P56589 AP000692.2-201ENST00000608391 879 ntBASIC21.19■□□□□ 0.98
PEX3P56589 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PEX3P56589 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.18■□□□□ 0.98
PEX3P56589 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.18■□□□□ 0.98
PEX3P56589 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
PEX3P56589 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
PEX3P56589 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PEX3P56589 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PEX3P56589 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.18■□□□□ 0.98
PEX3P56589 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.18■□□□□ 0.98
PEX3P56589 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.18■□□□□ 0.98
PEX3P56589 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 BX088651.1-201ENST00000540551 451 ntBASIC21.18■□□□□ 0.98
PEX3P56589 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.18■□□□□ 0.98
PEX3P56589 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.18■□□□□ 0.98
PEX3P56589 DGCR10-201ENST00000609839 495 ntBASIC21.18■□□□□ 0.98
PEX3P56589 AC116562.4-201ENST00000641316 2276 ntBASIC21.18■□□□□ 0.98
PEX3P56589 AIRN-201ENST00000601203 4374 ntBASIC21.18■□□□□ 0.98
PEX3P56589 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.18■□□□□ 0.98
PEX3P56589 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PEX3P56589 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PEX3P56589 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PEX3P56589 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
PEX3P56589 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PEX3P56589 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PEX3P56589 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PEX3P56589 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PEX3P56589 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PEX3P56589 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PEX3P56589 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.17■□□□□ 0.98
PEX3P56589 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PEX3P56589 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PEX3P56589 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.17■□□□□ 0.98
PEX3P56589 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.17■□□□□ 0.98
PEX3P56589 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PEX3P56589 AL032819.2-201ENST00000624543 2162 ntBASIC21.17■□□□□ 0.98
PEX3P56589 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PEX3P56589 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PEX3P56589 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.16■□□□□ 0.98
PEX3P56589 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.16■□□□□ 0.98
PEX3P56589 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PEX3P56589 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.16■□□□□ 0.98
PEX3P56589 MIR1238-201ENST00000408483 83 ntBASIC21.16■□□□□ 0.98
PEX3P56589 AL390955.1-201ENST00000428694 934 ntBASIC21.16■□□□□ 0.98
PEX3P56589 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.16■□□□□ 0.98
PEX3P56589 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.16■□□□□ 0.98
PEX3P56589 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.16■□□□□ 0.98
PEX3P56589 AC097488.1-201ENST00000507834 756 ntBASIC21.16■□□□□ 0.98
PEX3P56589 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.16■□□□□ 0.98
PEX3P56589 SLC25A1P4-201ENST00000567977 778 ntBASIC21.16■□□□□ 0.98
PEX3P56589 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms