Protein–RNA interactions for Protein: P49662

CASP4, Caspase-4, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4P49662 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.98■□□□□ 0.95
CASP4P49662 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.98■□□□□ 0.95
CASP4P49662 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.98■□□□□ 0.95
CASP4P49662 Z85996.1-201ENST00000494644 937 ntBASIC20.98■□□□□ 0.95
CASP4P49662 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CASP4P49662 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.98■□□□□ 0.95
CASP4P49662 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.98■□□□□ 0.95
CASP4P49662 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.98■□□□□ 0.95
CASP4P49662 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CASP4P49662 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CASP4P49662 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.98■□□□□ 0.95
CASP4P49662 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.98■□□□□ 0.95
CASP4P49662 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CASP4P49662 KRT8P41-201ENST00000533985 1514 ntBASIC20.98■□□□□ 0.95
CASP4P49662 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CASP4P49662 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.98■□□□□ 0.95
CASP4P49662 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CASP4P49662 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CASP4P49662 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CASP4P49662 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CASP4P49662 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.97■□□□□ 0.95
CASP4P49662 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CASP4P49662 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.97■□□□□ 0.95
CASP4P49662 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CASP4P49662 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CASP4P49662 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.97■□□□□ 0.95
CASP4P49662 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CASP4P49662 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CASP4P49662 UBE2SP1-201ENST00000450587 669 ntBASIC20.97■□□□□ 0.95
CASP4P49662 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.97■□□□□ 0.95
CASP4P49662 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CASP4P49662 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.97■□□□□ 0.95
CASP4P49662 AF186192.3-201ENST00000583427 947 ntBASIC20.97■□□□□ 0.95
CASP4P49662 AL353708.3-201ENST00000610272 989 ntBASIC20.97■□□□□ 0.95
CASP4P49662 AL445675.2-201ENST00000620291 557 ntBASIC20.97■□□□□ 0.95
CASP4P49662 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.97■□□□□ 0.95
CASP4P49662 BX323043.1-201ENST00000641006 1765 ntBASIC20.97■□□□□ 0.95
CASP4P49662 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CASP4P49662 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CASP4P49662 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CASP4P49662 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.97■□□□□ 0.95
CASP4P49662 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.97■□□□□ 0.95
CASP4P49662 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 AC004980.1-204ENST00000429707 299 ntBASIC20.96■□□□□ 0.95
CASP4P49662 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 AP002982.1-201ENST00000492365 877 ntBASIC20.96■□□□□ 0.95
CASP4P49662 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.96■□□□□ 0.95
CASP4P49662 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 RARRES2P10-201ENST00000564312 460 ntBASIC20.96■□□□□ 0.95
CASP4P49662 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.96■□□□□ 0.95
CASP4P49662 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.96■□□□□ 0.95
CASP4P49662 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.96■□□□□ 0.95
CASP4P49662 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CASP4P49662 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.96■□□□□ 0.95
CASP4P49662 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.96■□□□□ 0.95
CASP4P49662 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CASP4P49662 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.95■□□□□ 0.94
CASP4P49662 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.95■□□□□ 0.94
CASP4P49662 IRX1P1-201ENST00000438849 1838 ntBASIC20.95■□□□□ 0.94
CASP4P49662 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.95■□□□□ 0.94
CASP4P49662 FP475955.4-201ENST00000623131 1990 ntBASIC20.95■□□□□ 0.94
CASP4P49662 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.95■□□□□ 0.94
CASP4P49662 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.95■□□□□ 0.94
CASP4P49662 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.95■□□□□ 0.94
CASP4P49662 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CASP4P49662 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CASP4P49662 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CASP4P49662 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
CASP4P49662 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CASP4P49662 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms