Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CX3CR1P49238 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.89■□□□□ 0.29
CX3CR1P49238 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC16.89■□□□□ 0.29
CX3CR1P49238 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CX3CR1P49238 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CX3CR1P49238 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CX3CR1P49238 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.89■□□□□ 0.29
CX3CR1P49238 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.89■□□□□ 0.29
CX3CR1P49238 KRT18P16-201ENST00000510337 1294 ntBASIC16.89■□□□□ 0.29
CX3CR1P49238 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CX3CR1P49238 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CX3CR1P49238 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.89■□□□□ 0.29
CX3CR1P49238 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CX3CR1P49238 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CX3CR1P49238 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.89■□□□□ 0.29
CX3CR1P49238 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 AC104417.2-201ENST00000562989 1793 ntBASIC16.89■□□□□ 0.29
CX3CR1P49238 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CX3CR1P49238 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CX3CR1P49238 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CX3CR1P49238 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.88■□□□□ 0.29
CX3CR1P49238 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC16.88■□□□□ 0.29
CX3CR1P49238 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.88■□□□□ 0.29
CX3CR1P49238 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.88■□□□□ 0.29
CX3CR1P49238 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CX3CR1P49238 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.88■□□□□ 0.29
CX3CR1P49238 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.88■□□□□ 0.29
CX3CR1P49238 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.88■□□□□ 0.29
CX3CR1P49238 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CX3CR1P49238 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CX3CR1P49238 AL161938.1-201ENST00000569833 2180 ntBASIC16.87■□□□□ 0.29
CX3CR1P49238 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.87■□□□□ 0.29
CX3CR1P49238 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.87■□□□□ 0.29
CX3CR1P49238 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CX3CR1P49238 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 POM121L13P-201ENST00000422362 380 ntBASIC16.87■□□□□ 0.29
CX3CR1P49238 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CX3CR1P49238 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.87■□□□□ 0.29
CX3CR1P49238 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 UNC93B5-201ENST00000530315 699 ntBASIC16.87■□□□□ 0.29
CX3CR1P49238 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.87■□□□□ 0.29
CX3CR1P49238 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.87■□□□□ 0.29
CX3CR1P49238 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.87■□□□□ 0.29
CX3CR1P49238 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CX3CR1P49238 SDHAP1-207ENST00000440850 2000 ntBASIC16.87■□□□□ 0.29
CX3CR1P49238 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.87■□□□□ 0.29
CX3CR1P49238 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CX3CR1P49238 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.86■□□□□ 0.29
CX3CR1P49238 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CX3CR1P49238 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.86■□□□□ 0.29
CX3CR1P49238 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CX3CR1P49238 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.86■□□□□ 0.29
CX3CR1P49238 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.86■□□□□ 0.29
CX3CR1P49238 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.86■□□□□ 0.29
CX3CR1P49238 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CX3CR1P49238 APTR-205ENST00000447009 902 ntTSL 2 BASIC16.86■□□□□ 0.29
CX3CR1P49238 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms