Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CA15P1-201ENST00000481698 905 ntBASIC20.4■□□□□ 0.86
LHX1P48742 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.4■□□□□ 0.86
LHX1P48742 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
LHX1P48742 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.4■□□□□ 0.86
LHX1P48742 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LHX1P48742 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LHX1P48742 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.4■□□□□ 0.86
LHX1P48742 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
LHX1P48742 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LHX1P48742 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.39■□□□□ 0.86
LHX1P48742 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.39■□□□□ 0.85
LHX1P48742 CCR12P-201ENST00000446203 998 ntBASIC20.39■□□□□ 0.85
LHX1P48742 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.39■□□□□ 0.85
LHX1P48742 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.39■□□□□ 0.85
LHX1P48742 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.39■□□□□ 0.85
LHX1P48742 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LHX1P48742 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.39■□□□□ 0.85
LHX1P48742 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LHX1P48742 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LHX1P48742 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.39■□□□□ 0.85
LHX1P48742 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.39■□□□□ 0.85
LHX1P48742 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LHX1P48742 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.39■□□□□ 0.85
LHX1P48742 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LHX1P48742 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.38■□□□□ 0.85
LHX1P48742 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.38■□□□□ 0.85
LHX1P48742 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
LHX1P48742 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.38■□□□□ 0.85
LHX1P48742 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
LHX1P48742 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.38■□□□□ 0.85
LHX1P48742 AC116562.4-202ENST00000641738 218 ntBASIC20.38■□□□□ 0.85
LHX1P48742 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LHX1P48742 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LHX1P48742 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.38■□□□□ 0.85
LHX1P48742 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
LHX1P48742 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LHX1P48742 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.37■□□□□ 0.85
LHX1P48742 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
LHX1P48742 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
LHX1P48742 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 TSPY23P-201ENST00000440136 739 ntBASIC20.37■□□□□ 0.85
LHX1P48742 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.37■□□□□ 0.85
LHX1P48742 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.37■□□□□ 0.85
LHX1P48742 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
LHX1P48742 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 AC005363.2-201ENST00000618631 242 ntBASIC20.37■□□□□ 0.85
LHX1P48742 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
LHX1P48742 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LHX1P48742 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.37■□□□□ 0.85
LHX1P48742 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.36■□□□□ 0.85
LHX1P48742 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
LHX1P48742 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.36■□□□□ 0.85
LHX1P48742 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
LHX1P48742 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.36■□□□□ 0.85
LHX1P48742 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.36■□□□□ 0.85
LHX1P48742 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.36■□□□□ 0.85
LHX1P48742 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.36■□□□□ 0.85
LHX1P48742 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.36■□□□□ 0.85
LHX1P48742 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.36■□□□□ 0.85
LHX1P48742 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.36■□□□□ 0.85
LHX1P48742 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.36■□□□□ 0.85
LHX1P48742 AL158211.5-201ENST00000623583 2518 ntBASIC20.36■□□□□ 0.85
LHX1P48742 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.36■□□□□ 0.85
LHX1P48742 Z82202.1-201ENST00000623446 1880 ntBASIC20.36■□□□□ 0.85
LHX1P48742 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LHX1P48742 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.36■□□□□ 0.85
LHX1P48742 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.36■□□□□ 0.85
LHX1P48742 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
LHX1P48742 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.35■□□□□ 0.85
LHX1P48742 AFG3L1P-217ENST00000557444 2447 ntBASIC20.35■□□□□ 0.85
LHX1P48742 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
LHX1P48742 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
LHX1P48742 TSPY17P-201ENST00000450329 467 ntBASIC20.35■□□□□ 0.85
LHX1P48742 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
LHX1P48742 AL023803.3-201ENST00000615559 522 ntBASIC20.35■□□□□ 0.85
LHX1P48742 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
LHX1P48742 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms