Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RORAP35398 INGX-201ENST00000359239 846 ntBASIC18.27■□□□□ 0.52
RORAP35398 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RORAP35398 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RORAP35398 ECEL1P2-202ENST00000465689 757 ntBASIC18.27■□□□□ 0.52
RORAP35398 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.27■□□□□ 0.52
RORAP35398 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.27■□□□□ 0.52
RORAP35398 AC010203.1-204ENST00000548782 407 ntBASIC18.27■□□□□ 0.52
RORAP35398 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.27■□□□□ 0.52
RORAP35398 FAM87A-204ENST00000613235 858 ntBASIC18.27■□□□□ 0.52
RORAP35398 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RORAP35398 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.27■□□□□ 0.52
RORAP35398 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
RORAP35398 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.27■□□□□ 0.51
RORAP35398 PCDHAC2-203ENST00000615316 3011 ntBASIC18.27■□□□□ 0.51
RORAP35398 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RORAP35398 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
RORAP35398 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RORAP35398 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RORAP35398 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RORAP35398 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.26■□□□□ 0.51
RORAP35398 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RORAP35398 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RORAP35398 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.26■□□□□ 0.51
RORAP35398 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RORAP35398 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RORAP35398 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RORAP35398 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
RORAP35398 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.26■□□□□ 0.51
RORAP35398 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
RORAP35398 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.26■□□□□ 0.51
RORAP35398 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.26■□□□□ 0.51
RORAP35398 AC128688.1-201ENST00000487626 519 ntBASIC18.26■□□□□ 0.51
RORAP35398 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.26■□□□□ 0.51
RORAP35398 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.26■□□□□ 0.51
RORAP35398 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.26■□□□□ 0.51
RORAP35398 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RORAP35398 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RORAP35398 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.26■□□□□ 0.51
RORAP35398 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.26■□□□□ 0.51
RORAP35398 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.25■□□□□ 0.51
RORAP35398 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 KRT8P41-201ENST00000533985 1514 ntBASIC18.25■□□□□ 0.51
RORAP35398 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.25■□□□□ 0.51
RORAP35398 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.25■□□□□ 0.51
RORAP35398 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.25■□□□□ 0.51
RORAP35398 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RORAP35398 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RORAP35398 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
RORAP35398 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
RORAP35398 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
RORAP35398 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.24■□□□□ 0.51
RORAP35398 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.24■□□□□ 0.51
RORAP35398 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.24■□□□□ 0.51
RORAP35398 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 SLC25A1P2-201ENST00000430693 912 ntBASIC18.24■□□□□ 0.51
RORAP35398 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RORAP35398 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.24■□□□□ 0.51
RORAP35398 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.24■□□□□ 0.51
RORAP35398 AL049597.2-201ENST00000565575 961 ntBASIC18.24■□□□□ 0.51
RORAP35398 AL445228.2-201ENST00000605589 952 ntBASIC18.24■□□□□ 0.51
RORAP35398 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.24■□□□□ 0.51
RORAP35398 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RORAP35398 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.24■□□□□ 0.51
RORAP35398 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.24■□□□□ 0.51
RORAP35398 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.24■□□□□ 0.51
RORAP35398 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RORAP35398 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RORAP35398 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.23■□□□□ 0.51
RORAP35398 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
RORAP35398 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RORAP35398 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms