Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.26■□□□□ 0.83
CHRNA3P32297 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
CHRNA3P32297 MTDHP1-201ENST00000605323 784 ntBASIC20.26■□□□□ 0.83
CHRNA3P32297 FAM197Y4-202ENST00000622692 608 ntBASIC20.26■□□□□ 0.83
CHRNA3P32297 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CHRNA3P32297 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
CHRNA3P32297 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA3P32297 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA3P32297 AC116351.2-201ENST00000606540 1585 ntBASIC20.25■□□□□ 0.83
CHRNA3P32297 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA3P32297 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.25■□□□□ 0.83
CHRNA3P32297 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA3P32297 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA3P32297 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA3P32297 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHRNA3P32297 UBE2SP1-201ENST00000450587 669 ntBASIC20.25■□□□□ 0.83
CHRNA3P32297 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.25■□□□□ 0.83
CHRNA3P32297 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA3P32297 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA3P32297 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CHRNA3P32297 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA3P32297 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CHRNA3P32297 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.25■□□□□ 0.83
CHRNA3P32297 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA3P32297 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CHRNA3P32297 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA3P32297 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA3P32297 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
CHRNA3P32297 AC141586.3-201ENST00000562166 1838 ntBASIC20.25■□□□□ 0.83
CHRNA3P32297 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA3P32297 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CHRNA3P32297 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.24■□□□□ 0.83
CHRNA3P32297 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.24■□□□□ 0.83
CHRNA3P32297 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CHRNA3P32297 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.24■□□□□ 0.83
CHRNA3P32297 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.24■□□□□ 0.83
CHRNA3P32297 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.24■□□□□ 0.83
CHRNA3P32297 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA3P32297 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.24■□□□□ 0.83
CHRNA3P32297 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
CHRNA3P32297 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.23■□□□□ 0.83
CHRNA3P32297 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.23■□□□□ 0.83
CHRNA3P32297 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.23■□□□□ 0.83
CHRNA3P32297 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.23■□□□□ 0.83
CHRNA3P32297 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CHRNA3P32297 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.23■□□□□ 0.83
CHRNA3P32297 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CHRNA3P32297 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.23■□□□□ 0.83
CHRNA3P32297 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.23■□□□□ 0.83
CHRNA3P32297 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.23■□□□□ 0.83
CHRNA3P32297 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CHRNA3P32297 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.23■□□□□ 0.83
CHRNA3P32297 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.23■□□□□ 0.83
CHRNA3P32297 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.23■□□□□ 0.83
CHRNA3P32297 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.23■□□□□ 0.83
CHRNA3P32297 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA3P32297 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
CHRNA3P32297 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CHRNA3P32297 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CHRNA3P32297 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CHRNA3P32297 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHRNA3P32297 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHRNA3P32297 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHRNA3P32297 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHRNA3P32297 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHRNA3P32297 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHRNA3P32297 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHRNA3P32297 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms