Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TSPY19P-201ENST00000418461 509 ntBASIC23.16■■□□□ 1.3
COL4A5P29400 TSPY18P-201ENST00000441642 509 ntBASIC23.16■■□□□ 1.3
COL4A5P29400 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 AC034232.1-201ENST00000506026 1064 ntBASIC23.16■■□□□ 1.3
COL4A5P29400 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.16■■□□□ 1.3
COL4A5P29400 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC23.16■■□□□ 1.3
COL4A5P29400 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
COL4A5P29400 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
COL4A5P29400 ANKRD18DP-204ENST00000455355 1975 ntBASIC23.15■■□□□ 1.3
COL4A5P29400 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
COL4A5P29400 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
COL4A5P29400 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.15■■□□□ 1.3
COL4A5P29400 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
COL4A5P29400 GOLGA2P11-201ENST00000562660 1621 ntBASIC23.15■■□□□ 1.3
COL4A5P29400 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
COL4A5P29400 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC23.15■■□□□ 1.3
COL4A5P29400 CHCHD2P8-201ENST00000429873 447 ntBASIC23.15■■□□□ 1.3
COL4A5P29400 HLA-F-220ENST00000434407 884 ntBASIC23.15■■□□□ 1.3
COL4A5P29400 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC23.15■■□□□ 1.3
COL4A5P29400 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC23.15■■□□□ 1.3
COL4A5P29400 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC23.15■■□□□ 1.3
COL4A5P29400 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A5P29400 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
COL4A5P29400 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.14■■□□□ 1.3
COL4A5P29400 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL4A5P29400 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL4A5P29400 TSPY12P-201ENST00000421279 868 ntBASIC23.14■■□□□ 1.29
COL4A5P29400 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A5P29400 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC23.14■■□□□ 1.29
COL4A5P29400 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC23.14■■□□□ 1.29
COL4A5P29400 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC23.14■■□□□ 1.29
COL4A5P29400 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A5P29400 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC23.14■■□□□ 1.29
COL4A5P29400 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
COL4A5P29400 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A5P29400 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A5P29400 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A5P29400 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
COL4A5P29400 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.14■■□□□ 1.29
COL4A5P29400 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC23.14■■□□□ 1.29
COL4A5P29400 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A5P29400 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
COL4A5P29400 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A5P29400 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A5P29400 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.13■■□□□ 1.29
COL4A5P29400 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A5P29400 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
COL4A5P29400 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
COL4A5P29400 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC23.13■■□□□ 1.29
COL4A5P29400 KRT8P26-201ENST00000534154 1276 ntBASIC23.13■■□□□ 1.29
COL4A5P29400 RNF126P1-202ENST00000569893 925 ntBASIC23.13■■□□□ 1.29
COL4A5P29400 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC23.13■■□□□ 1.29
COL4A5P29400 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A5P29400 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A5P29400 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A5P29400 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC23.13■■□□□ 1.29
COL4A5P29400 AC104417.2-201ENST00000562989 1793 ntBASIC23.13■■□□□ 1.29
COL4A5P29400 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A5P29400 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A5P29400 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A5P29400 AC006538.3-201ENST00000612495 578 ntBASIC23.13■■□□□ 1.29
COL4A5P29400 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
COL4A5P29400 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC23.12■■□□□ 1.29
COL4A5P29400 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
COL4A5P29400 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 CIB2-208ENST00000560618 804 ntTSL 2 BASIC23.12■■□□□ 1.29
COL4A5P29400 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.12■■□□□ 1.29
COL4A5P29400 AL157888.1-201ENST00000631930 593 ntBASIC23.12■■□□□ 1.29
COL4A5P29400 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
COL4A5P29400 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A5P29400 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
COL4A5P29400 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A5P29400 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A5P29400 AC009237.14-201ENST00000609975 1594 ntBASIC23.11■■□□□ 1.29
COL4A5P29400 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC23.11■■□□□ 1.29
COL4A5P29400 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A5P29400 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A5P29400 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
COL4A5P29400 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC23.11■■□□□ 1.29
COL4A5P29400 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC23.11■■□□□ 1.29
COL4A5P29400 NUS1P1-201ENST00000446295 882 ntBASIC23.11■■□□□ 1.29
COL4A5P29400 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms