Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KRT18P22-201ENST00000402024 1347 ntBASIC20.29■□□□□ 0.84
BDNFP23560 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.29■□□□□ 0.84
BDNFP23560 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 KRT8P11-201ENST00000409686 1436 ntBASIC20.29■□□□□ 0.84
BDNFP23560 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.29■□□□□ 0.84
BDNFP23560 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 TSPY14P-201ENST00000303979 915 ntBASIC20.29■□□□□ 0.84
BDNFP23560 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
BDNFP23560 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
BDNFP23560 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
BDNFP23560 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
BDNFP23560 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
BDNFP23560 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
BDNFP23560 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.29■□□□□ 0.84
BDNFP23560 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
BDNFP23560 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BDNFP23560 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.28■□□□□ 0.84
BDNFP23560 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BDNFP23560 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
BDNFP23560 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
BDNFP23560 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BDNFP23560 INGX-201ENST00000359239 846 ntBASIC20.28■□□□□ 0.84
BDNFP23560 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.28■□□□□ 0.84
BDNFP23560 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
BDNFP23560 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.28■□□□□ 0.84
BDNFP23560 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.28■□□□□ 0.84
BDNFP23560 FAM210CP-201ENST00000445714 574 ntBASIC20.28■□□□□ 0.84
BDNFP23560 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.28■□□□□ 0.84
BDNFP23560 EGLN1P1-201ENST00000531623 762 ntBASIC20.28■□□□□ 0.84
BDNFP23560 CKBP1-201ENST00000565489 1086 ntBASIC20.28■□□□□ 0.84
BDNFP23560 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.28■□□□□ 0.84
BDNFP23560 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.28■□□□□ 0.84
BDNFP23560 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
BDNFP23560 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.28■□□□□ 0.84
BDNFP23560 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
BDNFP23560 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
BDNFP23560 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.27■□□□□ 0.84
BDNFP23560 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
BDNFP23560 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
BDNFP23560 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.27■□□□□ 0.84
BDNFP23560 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 RCN1P1-201ENST00000400413 996 ntBASIC20.27■□□□□ 0.84
BDNFP23560 ECEL1P2-202ENST00000465689 757 ntBASIC20.27■□□□□ 0.84
BDNFP23560 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
BDNFP23560 AC005363.2-201ENST00000618631 242 ntBASIC20.27■□□□□ 0.84
BDNFP23560 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
BDNFP23560 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BDNFP23560 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
BDNFP23560 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
BDNFP23560 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
BDNFP23560 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
BDNFP23560 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.27■□□□□ 0.83
BDNFP23560 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.26■□□□□ 0.83
BDNFP23560 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.26■□□□□ 0.83
BDNFP23560 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
BDNFP23560 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.26■□□□□ 0.83
BDNFP23560 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
BDNFP23560 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
BDNFP23560 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.26■□□□□ 0.83
BDNFP23560 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
BDNFP23560 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
BDNFP23560 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
BDNFP23560 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
BDNFP23560 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.26■□□□□ 0.83
BDNFP23560 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BDNFP23560 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.26■□□□□ 0.83
BDNFP23560 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
BDNFP23560 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.25■□□□□ 0.83
BDNFP23560 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
BDNFP23560 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
BDNFP23560 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BDNFP23560 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
BDNFP23560 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms